Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03700 Fragaria vesca HOM05D000249 ORTHO05D000206 2.2e-44 181.8 84 100.0
FAN24G0552 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.7e-41 172.2 84 94.0
FAN13G3200 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.4e-22 109.4 84 63.1
Lj1g0013672 Lotus japonicus HOM05D000249 ORTHO05D000206 3.4e-21 104.8 85 54.1
Cc07_g16240 Coffea canephora HOM05D000249 ORTHO05D000206 3.7e-20 101.3 82 58.5
CAN.G65.201 Capsicum annuum HOM05D000249 ORTHO05D000206 1.1e-19 99.8 82 54.9
FAN02G4132 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.4e-19 99.4 80 58.8
Lalb_Chr08g0238861 Lupinus albus HOM05D000249 ORTHO05D000206 3.2e-19 98.2 84 50.0
CANSAT01G1486 Cannabis sativa HOM05D000249 ORTHO05D000206 5.4e-19 97.4 83 55.4
Nitab4.5_0000904g0030 Nicotiana tabacum HOM05D000249 ORTHO05D000206 7.1e-19 97.1 82 53.7
FAN14G3092 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.2e-18 96.3 85 56.5
Glyma.06G146500 Glycine max HOM05D000249 ORTHO05D000206 1.2e-18 96.3 85 49.4
PSO675G5947 Papaver somniferum HOM05D000249 ORTHO05D000206 1.2e-18 96.3 81 56.8
Peaxi162Scf00359g00005 Petunia axillaris HOM05D000249 ORTHO05D000206 1.2e-18 96.3 82 52.4
AUR62016279 Chenopodium quinoa HOM05D000249 ORTHO05D000206 1.6e-18 95.9 83 49.4
Glyma.04G219400 Glycine max HOM05D000249 ORTHO05D000206 1.6e-18 95.9 85 48.2
BcaC02g08750 Brassica carinata HOM05D000249 ORTHO05D000206 2.7e-18 95.1 84 56.0
C04p51070 Brassica napus HOM05D000249 ORTHO05D000206 2.7e-18 95.1 84 56.0
BolC4t26700H Brassica oleracea HOM05D000249 ORTHO05D000206 2.7e-18 95.1 84 56.0
Nitab4.5_0005995g0010 Nicotiana tabacum HOM05D000249 ORTHO05D000206 2.7e-18 95.1 82 52.4
MSTRG.23312 Avicennia marina HOM05D000249 ORTHO05D000206 3.5e-18 94.7 85 51.8
BcaB06g27798 Brassica carinata HOM05D000249 ORTHO05D000206 3.5e-18 94.7 85 54.1
A04p16540 Brassica napus HOM05D000249 ORTHO05D000206 3.5e-18 94.7 83 55.4
Prupe.6G172900 Prunus persica HOM05D000249 ORTHO05D000206 3.5e-18 94.7 83 53.0
Solyc04g051870.3 Solanum lycopersicum HOM05D000249 ORTHO05D000206 3.5e-18 94.7 82 51.2
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 3.5e-18 94.7 82 51.2
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 3.5e-18 94.7 82 51.2
BraA04t17290Z Brassica rapa HOM05D000249 ORTHO05D000206 4.6e-18 94.4 84 56.0
PGR004G0795 Punica granatum HOM05D000249 ORTHO05D000206 4.6e-18 94.4 83 51.8
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 6.0e-18 94.0 82 53.7
arahy.Tifrunner.gnm1.ann1.F06NHS Arachis hypogaea HOM05D000249 ORTHO05D000206 6.0e-18 94.0 84 51.2
arahy.Tifrunner.gnm1.ann1.UKW8RL Arachis hypogaea HOM05D000249 ORTHO05D000206 6.0e-18 94.0 84 51.2
CiPaw.03G134300 Carya illinoinensis HOM05D000249 ORTHO05D000206 6.0e-18 94.0 80 52.5
CARHR113030 Cardamine hirsuta HOM05D000249 ORTHO05D000206 7.8e-18 93.6 85 54.1
PSO541G4415 Papaver somniferum HOM05D000249 ORTHO05D000206 7.8e-18 93.6 83 54.2
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 1.0e-17 93.2 84 51.2
FAN16G1704 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.0e-17 93.2 80 55.0
SEGI_29572 Sequoiadendron giganteum HOM05D000249 ORTHO05D000206 1.0e-17 93.2 84 46.4
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 1.7e-17 92.4 84 48.8
CAN.G767.7 Capsicum annuum HOM05D000249 ORTHO05D000206 2.3e-17 92.0 81 49.4
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 2.3e-17 92.0 84 47.6
Nn1g05186 Nelumbo nucifera HOM05D000249 ORTHO05D000206 2.3e-17 92.0 83 51.8
Sp4g01030 Schrenkiella parvula HOM05D000249 ORTHO05D000206 3.0e-17 91.7 85 51.8
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 3.9e-17 91.3 80 52.5
MBI05_g43695_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 3.9e-17 91.3 79 51.9
CDE05G1217 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 5.1e-17 90.9 83 44.6
DCAR_020950 Daucus carota HOM05D000249 ORTHO05D000206 5.1e-17 90.9 84 48.8
QL06p032133 Quercus lobata HOM05D000249 ORTHO05D000206 5.1e-17 90.9 83 49.4
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 6.6e-17 90.5 84 45.2
MBI05_g43694_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 6.6e-17 90.5 79 50.6
DCAR_011455 Daucus carota HOM05D000249 ORTHO05D000206 8.6e-17 90.1 84 47.6
Aqoxy6G00478 Aquilegia oxysepala HOM05D000249 ORTHO05D000206 1.5e-16 89.4 84 47.6
Dinv19486 Davidia involucrata HOM05D000249 ORTHO05D000206 1.5e-16 89.4 81 48.1
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.5e-16 89.4 83 48.2
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.9e-16 89.0 82 48.8
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.9e-16 89.0 82 48.8
Ah.11g043070 Amaranthus hybridus HOM05D000249 ORTHO05D000206 3.3e-16 88.2 83 49.4
Hma1.2p1_0375F.1_g138740 Hydrangea macrophylla HOM05D000249 ORTHO05D000206 3.3e-16 88.2 82 52.4
Rhsim10G0150200 Rhododendron simsii HOM05D000249 ORTHO05D000206 4.3e-16 87.8 82 47.6
Atru.chr12.1168 Acer truncatum HOM05D000249 ORTHO05D000206 7.3e-16 87.0 83 44.6
Atru.chr7.1152 Acer truncatum HOM05D000249 ORTHO05D000206 7.3e-16 87.0 83 43.4
Duzib264G0588 Durio zibethinus HOM05D000249 ORTHO05D000206 7.3e-16 87.0 81 45.7
FAN19G0987 Fragaria x ananassa HOM05D000249 ORTHO05D000206 7.3e-16 87.0 58 67.2
Lj4P874T30 Lonicera japonica HOM05D000249 ORTHO05D000206 7.3e-16 87.0 82 47.6
Lj4P930T42 Lonicera japonica HOM05D000249 ORTHO05D000206 7.3e-16 87.0 82 47.6
Nn5g28908 Nelumbo nucifera HOM05D000249 ORTHO05D000206 7.3e-16 87.0 83 49.4
Oeu028524.1 Olea europaea HOM05D000249 ORTHO05D000206 7.3e-16 87.0 85 48.2
TAR381G1098 Trochodendron aralioides HOM05D000249 ORTHO05D000206 9.5e-16 86.7 83 49.4
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 2.1e-15 85.5 84 44.0
FvH4_1g22291 Fragaria vesca HOM05D000249 ORTHO05D000206 2.8e-15 85.1 58 65.5
FAN23G2161 Fragaria x ananassa HOM05D000249 ORTHO05D000206 2.8e-15 85.1 58 65.5
arahy.Tifrunner.gnm1.ann1.GH94D8 Arachis hypogaea HOM05D000249 ORTHO05D000206 3.6e-15 84.7 83 47.0
CDE05G2401 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 3.6e-15 84.7 80 45.0
SGA_v2.0_scaffold51G18753 Striga asiatica HOM05D000249 ORTHO05D000206 8.1e-15 83.6 81 48.1
AL4G11270 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.1e-14 83.2 85 49.4
RcHm_v2.0_Chr2g0116481 Rosa chinensis HOM05D000249 ORTHO05D000206 1.1e-14 83.2 84 48.8
Sc10g0007200 Simmondsia chinensis HOM05D000249 ORTHO05D000206 1.1e-14 83.2 83 44.6
Ciclev10025908m.g Citrus clementina HOM05D000249 ORTHO05D000206 4.0e-14 81.3 83 41.0
Migut.H02437 Erythranthe guttata HOM05D000249 ORTHO05D000206 5.2e-14 80.9 84 47.6
Aa31LG7G14700 Aethionema arabicum HOM05D000249 ORTHO05D000206 8.9e-14 80.1 85 47.1
ATR0564G264 Amborella trichopoda HOM05D000249 ORTHO05D000206 8.9e-14 80.1 83 42.2
Cpa.g.sc191.3 Carica papaya HOM05D000249 ORTHO05D000206 8.9e-14 80.1 83 45.8
Gohir.A11G053500 Gossypium hirsutum HOM05D000249 ORTHO05D000206 8.9e-14 80.1 84 41.7
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 2.6e-13 78.6 81 46.9
THA.LOC104807868 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 2.6e-13 78.6 85 50.6
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 3.4e-13 78.2 81 46.9
Haze_25043 Corylus avellana HOM05D000249 ORTHO05D000206 5.8e-13 77.4 81 43.2
Lsat_1_v5_gn_1_15001 Lactuca sativa HOM05D000249 ORTHO05D000206 7.6e-13 77.0 83 45.8
ECA238G1420 Erigeron canadensis HOM05D000249 ORTHO05D000206 1.7e-12 75.9 83 47.0
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 1.7e-12 75.9 90 40.0
Psat5g065400 Pisum sativum HOM05D006120 ORTHO05D007913 2.9e-12 75.1 83 42.2
VMungo1309G0394 Vigna mungo HOM05D000249 ORTHO05D000206 4.9e-12 74.3 85 42.4
Carub.0004s0109 Capsella rubella HOM05D000249 ORTHO05D000206 8.4e-12 73.6 85 44.7
Cc07_g16260 Coffea canephora HOM05D000249 ORTHO05D000206 8.4e-12 73.6 80 46.2
AT2G21950 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.9e-11 72.4 85 45.9
Phvul.009G139400 Phaseolus vulgaris HOM05D000249 ORTHO05D000206 1.9e-11 72.4 83 44.6
Cfa002755 Carpinus fangiana HOM05D000249 ORTHO05D000206 3.5e-10 68.2 44 54.5
unitig_899.g14606 Utricularia gibba HOM05D000249 ORTHO05D000206 3.5e-10 68.2 81 43.2
FvH4_1g12040 Fragaria vesca HOM05D000249 ORTHO05D000206 7.8e-10 67.0 37 73.0
FvH4_2g07590 Fragaria vesca HOM05D000249 ORTHO05D000206 7.8e-10 67.0 37 73.0
PSO675G8073 Papaver somniferum HOM05D000249 ORTHO05D000206 7.8e-10 67.0 88 44.3
Thhalv10000172m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.0e-09 66.6 85 43.5
Eucgr.I00322 Eucalyptus grandis HOM05D000249 ORTHO05D000206 2.3e-09 65.5 82 40.2
GSVIVG01022227001 Vitis vinifera HOM05D000249 ORTHO05D000206 2.3e-09 65.5 66 47.0
FvH4_6g12310 Fragaria vesca HOM05D000249 ORTHO05D000206 3.0e-09 65.1 37 70.3
Manes.13G076112 Manihot esculenta HOM05D000249 ORTHO05D000206 5.1e-09 64.3 86 36.0
AUR62003306 Chenopodium quinoa HOM05D000249 ORTHO05D000206 1.9e-08 62.4 45 46.7
FvH4_7g03870 Fragaria vesca HOM05D000249 ORTHO05D000206 3.3e-08 61.6 36 80.6
Zm00001eb111340 Zea mays HOM05D000249 ORTHO05D000206 5.6e-08 60.8 78 38.5
AL7G11590 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.2e-07 59.7 83 38.6
AT4G39550 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.6e-07 59.3 83 37.3
Mapoly0002s0290 Marchantia polymorpha HOM05D000667 ORTHO05D000206 2.8e-07 58.5 86 32.6
Os07g0673700 Oryza sativa ssp. japonica HOM05D000249 ORTHO05D000206 3.6e-07 58.2 78 37.2
Carub.0007s0142 Capsella rubella HOM05D000249 ORTHO05D000206 4.7e-07 57.8 83 37.3
Medtr3g094850 Medicago truncatula HOM05D000249 ORTHO05D000206 8.1e-07 57.0 44 45.5
Sp7g36330 Schrenkiella parvula HOM05D000249 ORTHO05D000206 8.1e-07 57.0 83 37.3
CARHR247150 Cardamine hirsuta HOM05D000249 ORTHO05D000206 4.0e-06 54.7 85 37.6
THA.LOC104807689 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 4.0e-06 54.7 101 31.7
vmacro23033 Vaccinium macrocarpon HOM05D000249 ORTHO05D000206 4.0e-06 54.7 80 40.0
AL2G17720 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 5.2e-06 54.3 84 40.5
BcaNung05811 Brassica carinata HOM05D000249 ORTHO05D000206 5.2e-06 54.3 84 34.5
BolC1t00060H Brassica oleracea HOM05D000249 ORTHO05D000206 5.2e-06 54.3 84 34.5


User provided reference genes

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