Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.9e-108 396.0 214 100.0
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.9e-105 386.0 214 98.1
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.4e-103 379.8 214 97.2
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.2e-102 376.7 214 95.8
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.1e-100 370.2 214 94.4
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 1.3e-93 346.7 218 89.0
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 2.6e-78 295.8 218 78.9
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 9.4e-68 260.8 217 72.4
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 4.1e-55 218.8 215 65.6
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.2e-53 213.0 215 62.3
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.6e-51 206.8 217 61.8
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 2.1e-51 206.5 177 74.0
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 3.6e-51 205.7 217 61.3
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 3.6e-51 205.7 214 60.7
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.3e-50 203.0 216 61.6
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.0e-49 199.9 223 57.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.6e-49 199.5 215 59.5
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.4e-49 199.1 209 60.3
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.7e-49 198.4 214 61.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 7.5e-49 198.0 215 59.1
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 7.5e-49 198.0 219 58.9
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 9.8e-49 197.6 217 61.3
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 9.8e-49 197.6 213 60.1
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.3e-48 197.2 220 59.5
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.3e-48 197.2 166 64.5
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.7e-48 196.8 203 57.6
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.2e-48 196.4 215 59.5
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 7.0e-47 191.4 214 58.4
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 7.0e-47 191.4 226 54.0
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 9.2e-47 191.0 214 55.1
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 1.2e-46 190.7 224 52.2
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.6e-46 190.3 216 59.3
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 2.0e-46 189.9 217 58.5
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.0e-46 189.9 216 57.4
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 3.5e-46 189.1 211 57.3
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 7.7e-46 188.0 218 58.7
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.7e-45 186.8 203 59.6
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.3e-45 186.4 224 53.6
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.9e-45 186.0 219 58.9
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.9e-45 186.0 212 60.8
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.8e-45 185.7 149 70.5
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 5.0e-45 185.3 224 57.6
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 8.6e-45 184.5 219 58.0
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 8.6e-45 184.5 210 58.1
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 8.6e-45 184.5 215 54.9
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.5e-44 183.7 168 65.5
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-44 182.6 218 57.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 9.5e-44 181.0 219 56.6
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-43 180.6 157 70.1
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.1e-43 179.9 155 69.7
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.1e-43 179.9 170 57.1
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 2.1e-43 179.9 170 61.2
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 6.1e-43 178.3 213 58.7
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 4.0e-42 175.6 149 73.2
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 5.2e-42 175.3 214 52.3
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.5e-41 173.7 196 57.1
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.6e-41 172.9 189 60.8
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 4.4e-41 172.2 212 49.5
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 2.9e-40 169.5 212 54.2
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.9e-40 169.5 158 64.6
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 6.4e-40 168.3 215 54.0
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.1e-39 167.5 200 53.5
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.4e-39 167.2 226 53.5
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.7e-38 162.9 194 50.5
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 4.6e-38 162.2 208 53.4
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.3e-37 160.6 111 70.3
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.3e-37 160.6 111 70.3
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 5.0e-37 158.7 111 69.4
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.5e-36 157.1 113 70.8
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 3.3e-36 156.0 205 53.7
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.3e-36 155.6 223 49.3
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 5.6e-36 155.2 196 51.5
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 4.7e-35 152.1 168 57.7
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.0e-34 151.0 147 58.5
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.3e-34 149.8 149 57.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.5e-33 147.1 168 57.7
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.6e-33 146.4 129 66.7
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 3.4e-33 146.0 147 59.9
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 4.4e-33 145.6 168 57.1
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 5.8e-33 145.2 103 69.9
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.9e-31 140.2 206 51.9
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 5.4e-31 138.7 234 44.9
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 7.0e-31 138.3 99 71.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.2e-30 137.5 194 48.5
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 2.0e-30 136.7 255 43.9
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 1.3e-29 134.0 293 40.6
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-27 127.1 110 72.7
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.3e-26 123.2 93 82.8
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 5.2e-26 122.1 168 57.1
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 8.9e-26 121.3 164 59.1
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 4.4e-25 119.0 94 61.7
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.2e-23 112.8 217 40.6
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 3.2e-23 112.8 86 67.4
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.2e-22 110.9 74 67.6
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.5e-22 109.4 110 56.4
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 1.0e-21 107.8 105 55.2
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 5.1e-21 105.5 103 56.3
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 5.1e-21 105.5 103 56.3
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 6.6e-21 105.1 110 54.5
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.1e-20 104.4 87 63.2
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.9e-20 103.6 109 53.2
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.5e-20 103.2 110 53.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 2.5e-20 103.2 110 51.8
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 4.3e-20 102.4 85 63.5
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.3e-20 102.4 89 58.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 5.6e-20 102.1 90 58.9
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 5.6e-20 102.1 89 59.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 7.3e-20 101.7 90 63.3
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 9.5e-20 101.3 60 86.7
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 9.5e-20 101.3 89 57.3
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.2e-19 100.9 85 62.4
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.6e-19 100.5 107 52.3
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 1.6e-19 100.5 109 56.9
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.6e-19 100.5 110 52.7
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.8e-19 99.8 89 60.7
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.6e-19 99.4 103 51.5
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 4.7e-19 99.0 90 56.7
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 6.2e-19 98.6 108 52.8
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.4e-18 97.4 89 58.4
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.4e-18 97.4 89 58.4
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.4e-18 97.4 110 52.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.3e-18 96.7 89 56.2
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 2.3e-18 96.7 130 46.9
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 2.3e-18 96.7 207 38.6
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 2.3e-18 96.7 134 49.3
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 5.2e-18 95.5 89 55.1
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 5.2e-18 95.5 90 54.4
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 6.8e-18 95.1 187 38.5
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 8.9e-18 94.7 192 39.6
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.5e-17 94.0 89 56.2
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 2.0e-17 93.6 89 55.1
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 2.6e-17 93.2 89 57.3
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.6e-17 93.2 85 56.5
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.4e-17 92.8 193 37.3
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 4.4e-17 92.4 89 56.2
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 4.4e-17 92.4 89 56.2
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 4.4e-17 92.4 89 56.2
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 5.8e-17 92.0 90 52.2
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 9.9e-17 91.3 89 56.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.3e-16 90.9 87 58.6
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.3e-16 90.9 90 52.2
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 1.7e-16 90.5 116 47.4
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 2.2e-16 90.1 85 57.6
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 2.2e-16 90.1 85 54.1
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 2.9e-16 89.7 88 55.7
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 2.9e-16 89.7 88 55.7
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 3.8e-16 89.4 89 52.8
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.1e-15 87.8 89 51.7
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 4.1e-15 85.9 89 51.7
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.2e-14 84.3 87 54.0
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.2e-14 84.3 99 47.5
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.6e-14 84.0 59 66.1
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.6e-11 73.9 143 49.7
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 1.4e-10 70.9 148 50.0
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.4e-10 70.9 104 36.5
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 4.0e-10 69.3 100 55.0
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 5.2e-10 68.9 65 61.5
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 1.2e-09 67.8 100 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.3e-08 64.3 83 43.4
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.1e-07 61.2 138 39.9
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.9e-07 60.5 65 52.3
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 1.9e-07 60.5 66 57.6
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.2e-07 59.7 76 47.4
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 7.1e-07 58.5 55 56.4
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.6e-06 57.4 49 61.2


User provided reference genes

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