Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 6.5e-290 1000.0 488 100.0
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 3.7e-261 904.4 443 99.3
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.7e-258 895.6 443 98.0
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 2.9e-258 894.8 490 89.8
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 8.8e-255 883.2 490 89.4
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 2.0e-227 792.3 507 78.7
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 9.8e-222 773.5 490 76.9
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 1.3e-200 703.4 495 69.9
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 1.3e-200 703.4 485 71.8
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 4.2e-196 688.3 492 67.7
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 4.6e-195 684.9 498 67.3
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 6.0e-195 684.5 492 68.7
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 6.0e-195 684.5 488 69.9
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 7.9e-195 684.1 493 68.2
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 2.5e-193 679.1 495 67.3
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 9.6e-193 677.2 496 67.5
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 2.1e-192 676.0 498 66.7
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 2.8e-192 675.6 492 68.7
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 3.6e-192 675.2 494 66.8
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.8e-191 672.9 484 68.0
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 2.4e-191 672.5 482 68.9
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 3.1e-191 672.2 484 68.0
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 5.3e-191 671.4 484 68.4
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 9.0e-191 670.6 480 68.1
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 1.5e-190 669.8 531 64.6
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 2.0e-190 669.5 480 68.1
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 4.5e-190 668.3 484 68.2
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 3.8e-189 665.2 495 67.3
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 6.4e-189 664.5 502 64.9
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 1.9e-188 662.9 493 65.3
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 2.8e-184 649.0 470 68.3
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 1.5e-182 643.3 467 67.7
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 1.5e-182 643.3 494 65.0
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 3.8e-181 638.6 482 66.2
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 4.9e-181 638.3 490 64.5
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 4.9e-181 638.3 494 64.0
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 7.1e-180 634.4 496 63.7
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 3.5e-179 632.1 486 63.6
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 4.6e-179 631.7 492 65.0
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 2.5e-177 625.9 516 62.0
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 2.1e-176 622.9 493 63.9
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 4.8e-176 621.7 485 64.1
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 1.1e-175 620.5 493 63.9
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 2.4e-175 619.4 493 63.3
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 5.3e-175 618.2 493 63.3
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 2.0e-174 616.3 489 63.0
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 5.9e-174 614.8 493 64.1
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 2.9e-173 612.5 510 61.2
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 2.5e-172 609.4 501 63.3
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 7.2e-172 607.8 493 61.7
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 1.6e-171 606.7 494 60.3
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 2.1e-171 606.3 496 61.9
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 2.7e-171 605.9 507 60.6
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 3.9e-170 602.1 468 64.5
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 5.1e-170 601.7 459 65.8
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 8.7e-170 600.9 481 60.1
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 3.3e-169 599.0 522 58.6
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 7.4e-169 597.8 453 65.8
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 2.2e-168 596.3 481 60.1
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 2.8e-168 595.9 485 61.9
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 4.8e-168 595.1 490 61.8
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.4e-167 592.8 480 63.1
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 4.1e-167 592.0 486 61.3
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 4.1e-167 592.0 491 61.1
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 5.3e-167 591.7 491 61.3
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 5.3e-167 591.7 483 62.3
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 5.3e-167 591.7 485 62.7
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 5.3e-167 591.7 526 59.3
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 9.0e-167 590.9 497 60.2
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 9.0e-167 590.9 490 60.8
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 2.6e-166 589.3 483 61.5
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 3.4e-166 589.0 492 61.0
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 7.7e-166 587.8 485 63.1
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 1.0e-165 587.4 495 60.4
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 1.3e-165 587.0 490 60.2
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 1.3e-165 587.0 495 61.2
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 1.3e-165 587.0 454 64.5
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 5.0e-165 585.1 470 62.3
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 1.6e-163 580.1 494 59.7
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 1.6e-163 580.1 494 59.7
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 2.7e-163 579.3 465 61.9
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 2.0e-161 573.2 490 59.4
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 9.7e-161 570.9 482 60.8
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 5.3e-159 565.1 454 63.2
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 1.3e-157 560.5 510 58.4
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 1.4e-156 557.0 502 55.2
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 1.4e-154 550.4 487 56.3
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 3.9e-154 548.9 489 58.3
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 4.4e-153 545.4 480 56.5
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 8.2e-152 541.2 488 57.4
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 5.9e-150 535.0 504 54.0
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 7.7e-150 534.6 450 60.7
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 1.4e-146 523.9 435 62.3
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 2.2e-144 516.5 501 53.9
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 2.0e-137 493.4 504 53.0
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 5.7e-137 491.9 494 53.6
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 1.7e-136 490.3 489 54.4
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 1.3e-128 464.2 486 53.1
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 7.0e-127 458.4 317 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 1.8e-122 443.7 480 49.4
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 4.4e-121 439.1 545 44.8
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 3.7e-120 436.0 560 44.1
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 5.4e-119 432.2 403 55.8
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 3.3e-116 422.9 280 76.1
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 1.8e-114 417.2 352 62.5
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 6.6e-109 398.7 398 53.8
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 8.1e-107 391.7 278 68.3
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.6e-102 377.5 319 60.8
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 6.2e-99 365.5 484 43.0
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 4.0e-98 362.8 487 44.4
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 1.8e-69 267.7 306 50.0
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 1.3e-64 251.5 329 41.6
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 1.8e-61 241.1 140 76.4
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 1.3e-59 235.0 388 36.1
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.0e-53 215.3 140 81.4
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 5.0e-48 196.4 828 24.3
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.8e-45 188.0 95 93.7
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 4.8e-43 179.9 337 34.7
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 4.4e-36 156.8 119 65.5
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 4.5e-25 120.2 75 73.3
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 2.5e-23 114.4 138 49.3
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 1.8e-10 71.6 107 40.2
MD10G1121100 Malus domestica HOM05D006341 ORTHO05D000377 1.7e-08 65.1 46 69.6
arahy.Tifrunner.gnm1.ann1.UTA44Z Arachis hypogaea HOM05D006341 ORTHO05D000377 2.1e-06 58.2 31 74.2


User provided reference genes

Program Settings