Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 0.0e+00 1210.7 615 100.0
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 0.0e+00 1188.7 616 98.5
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 0.0e+00 1118.6 616 92.7
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 6.4e-295 1016.9 616 83.4
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 5.3e-265 917.5 624 75.5
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.6e-261 906.0 627 73.7
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 2.1e-261 905.6 615 73.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.4e-260 902.9 617 74.9
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 3.0e-260 901.7 617 74.4
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 8.8e-260 900.2 617 74.4
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 5.7e-259 897.5 617 74.1
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 5.7e-259 897.5 617 72.3
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 7.4e-259 897.1 617 74.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.3e-258 896.3 617 74.2
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.4e-257 892.9 617 71.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 7.0e-257 890.6 617 72.9
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.6e-256 888.6 618 73.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.3e-255 886.3 617 73.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 8.5e-255 883.6 617 72.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.5e-254 882.1 617 73.6
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.5e-254 882.1 617 73.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 5.5e-254 880.9 617 73.6
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 9.4e-254 880.2 619 73.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 9.4e-254 880.2 617 72.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.0e-251 872.5 632 70.4
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 9.7e-251 870.2 617 70.3
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 9.7e-251 870.2 617 71.6
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.7e-250 868.2 615 72.5
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.7e-250 868.2 619 72.5
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 4.8e-250 867.8 618 71.2
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 6.3e-250 867.5 618 71.7
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.0e-248 862.4 616 70.5
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.5e-248 861.7 618 70.2
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 5.9e-248 860.9 620 71.0
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.1e-246 856.7 622 70.6
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 5.5e-246 854.4 622 70.9
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.4e-244 849.7 615 69.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.5e-243 846.3 620 69.5
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.7e-242 842.8 619 69.5
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 7.0e-241 837.4 617 68.2
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.0e-239 833.6 617 68.7
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.7e-239 832.8 503 84.7
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.3e-239 832.4 618 69.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 8.6e-239 830.5 620 67.7
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.9e-238 829.3 694 62.4
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 5.5e-238 827.8 618 67.8
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.2e-237 826.6 617 67.9
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.6e-237 826.2 618 68.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.8e-237 825.5 617 69.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 8.0e-237 823.9 747 59.4
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.4e-236 823.2 617 68.2
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.8e-236 822.8 618 68.1
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 3.0e-236 822.0 618 68.1
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 4.4e-235 818.1 618 67.8
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 4.9e-234 814.7 617 66.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 5.4e-233 811.2 609 68.8
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 7.0e-233 810.8 617 66.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.0e-231 807.0 578 72.1
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 8.6e-231 803.9 617 67.3
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.5e-230 802.4 600 68.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 7.3e-230 800.8 608 67.3
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 7.3e-230 800.8 615 65.5
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 7.3e-230 800.8 568 70.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 1.6e-229 799.7 619 64.8
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.1e-229 799.3 616 66.1
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 3.6e-229 798.5 619 64.6
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 6.1e-229 797.7 620 64.8
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 8.0e-229 797.3 619 64.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.8e-228 796.2 616 65.3
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 2.3e-228 795.8 619 64.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.3e-228 795.8 617 64.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.5e-227 793.1 573 70.2
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.4e-227 792.0 621 64.7
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 5.7e-227 791.2 616 65.1
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 7.5e-227 790.8 619 64.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.3e-226 790.0 612 67.5
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 4.9e-226 788.1 617 62.9
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.4e-225 785.8 620 63.5
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.0e-224 782.7 618 64.6
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 9.5e-222 773.9 617 65.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.6e-219 765.8 620 64.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.7e-218 761.9 602 66.4
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.9e-218 761.5 554 70.9
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.3e-215 752.7 550 69.6
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.9e-215 751.9 619 62.4
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.5e-214 749.2 619 62.4
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 4.0e-212 741.9 600 63.3
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 4.7e-197 691.8 617 60.3
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 5.2e-196 688.3 620 59.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-191 671.8 387 91.0
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.9e-185 653.3 640 54.8
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.8e-183 646.7 618 57.1
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 5.5e-169 598.6 682 48.8
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.6e-168 595.5 691 52.0
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.8e-159 567.0 529 56.7
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 5.1e-159 565.5 495 61.0
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-155 553.9 391 78.8
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 3.7e-149 532.7 390 69.2
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.0e-146 524.6 362 73.8
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.3e-146 524.2 507 54.0
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.7e-138 497.3 363 70.0
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 4.8e-133 479.2 364 70.1
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 2.8e-120 436.8 440 56.1
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.2e-111 406.0 326 66.6
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.4e-108 397.9 257 76.7
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 6.0e-107 392.5 257 75.9
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 2.6e-102 377.1 648 37.3
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-101 374.0 219 88.1
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 5.4e-100 369.4 219 87.2
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 7.8e-99 365.5 256 69.9
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 3.6e-96 356.7 244 70.5
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.0e-90 337.0 231 72.7
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 4.7e-80 303.1 179 78.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.8e-79 301.2 633 34.4
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 8.1e-64 249.2 136 91.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.0e-55 220.3 159 69.8
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-55 220.3 111 95.5
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.9e-55 219.5 111 100.0
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 6.5e-53 213.0 133 85.0
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-53 212.6 111 97.3
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.4e-52 211.8 157 67.5
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 9.3e-52 209.1 109 92.7
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-51 207.2 111 95.5
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-47 195.3 133 80.5
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 4.2e-44 183.7 110 80.9
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 7.4e-41 172.9 99 89.9
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.9e-39 166.4 82 98.8
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.6e-38 164.5 104 72.1
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-34 151.4 83 88.0
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 7.7e-30 136.3 72 91.7
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 5.5e-28 130.2 69 95.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-26 125.9 66 89.4
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 2.3e-26 124.8 515 24.5
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 1.5e-25 122.1 81 70.4
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 1.5e-25 122.1 81 70.4
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 3.3e-25 120.9 134 49.3
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-24 118.2 55 96.4
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-20 105.1 55 92.7
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.0e-18 97.4 83 54.2
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-13 81.6 42 85.7
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 8.5e-13 79.7 50 78.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-12 79.0 40 97.5
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.9e-12 78.6 149 41.6
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.6e-11 74.3 174 27.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.4e-10 72.4 41 85.4
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 2.6e-09 68.2 186 25.8
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-09 68.2 31 100.0
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.2e-08 65.1 203 25.6
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 2.2e-08 65.1 51 64.7
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.8e-08 64.7 54 57.4
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 3.7e-08 64.3 186 25.3
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 4.1e-07 60.8 41 63.4


User provided reference genes

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