Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g28180 Fragaria vesca HOM05D003813 ORTHO05D004557 5.3e-60 234.2 121 100.0
FAN19G1016 Fragaria x ananassa HOM05D003813 ORTHO05D004557 1.2e-59 233.0 121 99.2
FAN02G0116 Fragaria x ananassa HOM05D003813 ORTHO05D004557 3.1e-52 208.4 116 90.5
FAN05G0002 Fragaria x ananassa HOM05D003813 ORTHO05D004557 3.1e-52 208.4 116 90.5
FAN09G4891 Fragaria x ananassa HOM05D003813 ORTHO05D004557 3.1e-52 208.4 116 90.5
RcHm_v2.0_Chr3g0447821 Rosa chinensis HOM05D003813 ORTHO05D004557 3.1e-52 208.4 116 90.5
FvH4_6g00450 Fragaria vesca HOM05D003813 ORTHO05D004557 7.0e-52 207.2 116 89.7
Prupe.6G361900 Prunus persica HOM05D003813 ORTHO05D004557 4.5e-51 204.5 116 88.8
MD12G1086500 Malus domestica HOM05D003813 ORTHO05D004557 1.0e-50 203.4 116 87.9
MD04G1245300 Malus domestica HOM05D003813 ORTHO05D004557 1.3e-50 203.0 116 87.9
TAR365G1231 Trochodendron aralioides HOM05D003813 ORTHO05D004557 2.9e-50 201.8 116 87.9
CANSAT54G2490 Cannabis sativa HOM05D003813 ORTHO05D004557 5.0e-50 201.1 116 87.1
QL01p049619 Quercus lobata HOM05D003813 ORTHO05D004557 5.0e-50 201.1 116 87.9
TAR636G0205 Trochodendron aralioides HOM05D003813 ORTHO05D004557 8.5e-50 200.3 116 87.9
CiPaw.07G081100 Carya illinoinensis HOM05D003813 ORTHO05D004557 1.1e-49 199.9 116 86.2
Dinv29094 Davidia involucrata HOM05D003813 ORTHO05D004557 2.5e-49 198.7 116 86.2
Aqoxy2G04029 Aquilegia oxysepala HOM05D003813 ORTHO05D004557 4.2e-49 198.0 116 86.2
GSVIVG01019078001 Vitis vinifera HOM05D003813 ORTHO05D004557 5.5e-49 197.6 116 85.3
Potri.013G085600 Populus trichocarpa HOM05D003813 ORTHO05D004557 9.4e-49 196.8 116 82.8
Potri.019G053600 Populus trichocarpa HOM05D003813 ORTHO05D004557 9.4e-49 196.8 116 83.6
TWI75G0041 Tripterygium wilfordii HOM05D003813 ORTHO05D004557 2.7e-48 195.3 116 84.5
Cfa006257 Carpinus fangiana HOM05D002282 ORTHO05D004557 3.6e-48 194.9 116 83.6
Actinidia06802 Actinidia chinensis HOM05D003813 ORTHO05D004557 4.7e-48 194.5 116 83.6
Nn1g09834 Nelumbo nucifera HOM05D003813 ORTHO05D004557 4.7e-48 194.5 116 84.5
Sabra13G0078100 Salix brachista HOM05D003813 ORTHO05D004557 4.7e-48 194.5 116 81.0
Actinidia03285 Actinidia chinensis HOM05D003813 ORTHO05D004557 6.1e-48 194.1 116 82.8
Ciclev10011861m.g Citrus clementina HOM05D003813 ORTHO05D004557 6.1e-48 194.1 116 82.8
TWI36G0808 Tripterygium wilfordii HOM05D003813 ORTHO05D004557 6.1e-48 194.1 116 84.5
arahy.Tifrunner.gnm1.ann1.R9V655 Arachis hypogaea HOM05D003813 ORTHO05D004557 1.0e-47 193.4 116 82.8
CiPaw.08G114700 Carya illinoinensis HOM05D003813 ORTHO05D004557 1.0e-47 193.4 116 81.9
COL.COLO4_38033 Corchorus olitorius HOM05D003813 ORTHO05D004557 1.0e-47 193.4 116 82.8
PSO170G3829 Papaver somniferum HOM05D003813 ORTHO05D004557 1.0e-47 193.4 116 81.9
PSO357G0157 Papaver somniferum HOM05D003813 ORTHO05D004557 1.0e-47 193.4 116 81.9
VMungo1383G3136 Vigna mungo HOM05D003813 ORTHO05D004557 1.0e-47 193.4 116 82.8
Hma1.2p1_0609F.1_g188350 Hydrangea macrophylla HOM05D003813 ORTHO05D004557 1.4e-47 193.0 116 81.9
Manes.12G005200 Manihot esculenta HOM05D003813 ORTHO05D004557 1.4e-47 193.0 116 81.0
Dinv10505 Davidia involucrata HOM05D003813 ORTHO05D004557 1.8e-47 192.6 116 82.8
FAN05G4209 Fragaria x ananassa HOM05D003813 ORTHO05D004557 1.8e-47 192.6 108 90.7
Gohir.A08G226000 Gossypium hirsutum HOM05D003813 ORTHO05D004557 1.8e-47 192.6 116 82.8
HanXRQChr07g0194781 Helianthus annuus HOM05D003813 ORTHO05D004557 2.3e-47 192.2 116 81.9
Thecc.05G194200 Theobroma cacao HOM05D003813 ORTHO05D004557 2.3e-47 192.2 116 82.8
Phvul.008G054000 Phaseolus vulgaris HOM05D003813 ORTHO05D004557 3.0e-47 191.8 116 81.9
Lj1C575G1 Lonicera japonica HOM05D003813 ORTHO05D004557 4.0e-47 191.4 116 81.0
Lj1C595G1 Lonicera japonica HOM05D003813 ORTHO05D004557 4.0e-47 191.4 116 81.0
Gohir.A05G392700 Gossypium hirsutum HOM05D003813 ORTHO05D004557 5.2e-47 191.0 116 81.9
Gohir.D04G024400 Gossypium hirsutum HOM05D003813 ORTHO05D004557 5.2e-47 191.0 116 81.9
Gorai.012G026900 Gossypium raimondii HOM05D003813 ORTHO05D004557 5.2e-47 191.0 116 81.9
CSS0027041 Camellia sinensis var. sinensis HOM05D003813 ORTHO05D004557 6.8e-47 190.7 116 82.8
Gohir.D08G246400 Gossypium hirsutum HOM05D003813 ORTHO05D004557 6.8e-47 190.7 116 81.9
Lalb_Chr01g0020461 Lupinus albus HOM05D003813 ORTHO05D004557 6.8e-47 190.7 116 81.0
Cc09_g03710 Coffea canephora HOM05D003813 ORTHO05D004557 8.8e-47 190.3 116 80.2
Duzib106G0094 Durio zibethinus HOM05D003813 ORTHO05D004557 8.8e-47 190.3 116 82.8
Duzib128G2042 Durio zibethinus HOM05D003813 ORTHO05D004557 8.8e-47 190.3 116 81.9
Glyma.18G242500 Glycine max HOM05D003813 ORTHO05D004557 8.8e-47 190.3 116 81.9
Gorai.004G262900 Gossypium raimondii HOM05D003813 ORTHO05D004557 1.2e-46 189.9 116 81.9
Psat3g102960 Pisum sativum HOM05D003813 ORTHO05D004557 1.5e-46 189.5 116 81.0
Atru.chr12.1771 Acer truncatum HOM05D003813 ORTHO05D004557 2.0e-46 189.1 116 80.2
Ca_07991_v3 Cicer arietinum L. HOM05D003813 ORTHO05D004557 2.0e-46 189.1 116 80.2
PGR119G1052 Punica granatum HOM05D003813 ORTHO05D004557 2.0e-46 189.1 116 81.9
Duzib128G0856 Durio zibethinus HOM05D003813 ORTHO05D004557 2.6e-46 188.7 116 81.0
Manes.13G005100 Manihot esculenta HOM05D003813 ORTHO05D004557 3.4e-46 188.3 116 80.2
ClCG11G009850 Citrullus lanatus HOM05D003813 ORTHO05D004557 4.4e-46 188.0 116 80.2
MELO3C008571.2 Cucumis melo HOM05D003813 ORTHO05D004557 4.4e-46 188.0 116 80.2
Medtr7g080110 Medicago truncatula HOM05D003813 ORTHO05D004557 4.4e-46 188.0 116 80.2
CsaV3_2G010490 Cucumis sativus L. HOM05D003813 ORTHO05D004557 5.7e-46 187.6 116 80.2
Migut.F02121 Erythranthe guttata HOM05D003813 ORTHO05D004557 5.7e-46 187.6 116 79.3
Duzib177G0044 Durio zibethinus HOM05D003813 ORTHO05D004557 7.5e-46 187.2 116 81.0
Nitab4.5_0000083g0110 Nicotiana tabacum HOM05D003813 ORTHO05D004557 7.5e-46 187.2 116 80.2
CSS0003666 Camellia sinensis var. sinensis HOM05D003813 ORTHO05D004557 9.8e-46 186.8 116 81.0
DCAR_024893 Daucus carota HOM05D003813 ORTHO05D004557 9.8e-46 186.8 116 79.3
Glyma.09G249900 Glycine max HOM05D003813 ORTHO05D004557 9.8e-46 186.8 116 80.2
Nitab4.5_0001435g0070 Nicotiana tabacum HOM05D003813 ORTHO05D004557 9.8e-46 186.8 116 80.2
Sed0016020 Sechium edule HOM05D003813 ORTHO05D004557 9.8e-46 186.8 116 79.3
ATR0215G022 Amborella trichopoda HOM05D003813 ORTHO05D004557 1.7e-45 186.0 116 81.0
Lsat_1_v5_gn_2_108360 Lactuca sativa HOM05D003813 ORTHO05D004557 1.7e-45 186.0 116 78.4
Ah.06g195440 Amaranthus hybridus HOM05D003813 ORTHO05D004557 2.2e-45 185.7 116 80.2
ECA238G1935 Erigeron canadensis HOM05D003813 ORTHO05D004557 2.2e-45 185.7 116 77.6
PGR031G2727 Punica granatum HOM05D003813 ORTHO05D004557 2.2e-45 185.7 116 79.3
arahy.Tifrunner.gnm1.ann1.424XKM Arachis hypogaea HOM05D003813 ORTHO05D004557 2.8e-45 185.3 116 78.4
arahy.Tifrunner.gnm1.ann1.U6L591 Arachis hypogaea HOM05D003813 ORTHO05D004557 2.8e-45 185.3 116 78.4
Lj1g0016551 Lotus japonicus HOM05D003813 ORTHO05D004557 2.8e-45 185.3 114 80.7
Lalb_Chr21g0311461 Lupinus albus HOM05D003813 ORTHO05D004557 2.8e-45 185.3 116 77.6
EL10Ac4g09959 Beta vulgaris HOM05D003813 ORTHO05D004557 6.3e-45 184.1 116 78.4
AUR62000304 Chenopodium quinoa HOM05D003813 ORTHO05D004557 6.3e-45 184.1 116 77.6
SGA_v2.0_scaffold62G21499 Striga asiatica HOM05D002483 ORTHO05D004557 6.3e-45 184.1 116 77.6
AUR62006649 Chenopodium quinoa HOM05D003813 ORTHO05D004557 8.3e-45 183.7 116 77.6
Lalb_Chr02g0149471 Lupinus albus HOM05D003813 ORTHO05D004557 8.3e-45 183.7 116 75.9
THA.LOC104821913 Tarenaya hassleriana HOM05D003813 ORTHO05D004557 8.3e-45 183.7 116 76.7
Migut.F01871 Erythranthe guttata HOM05D003813 ORTHO05D004557 1.4e-44 183.0 116 76.7
HanXRQChr14g0454791 Helianthus annuus HOM05D003813 ORTHO05D004557 1.4e-44 183.0 116 76.7
Peaxi162Scf00156g00215 Petunia axillaris HOM05D003813 ORTHO05D004557 1.4e-44 183.0 116 77.6
SalBow1G2501 Salvia bowleyana HOM05D003813 ORTHO05D004557 1.4e-44 183.0 116 77.6
THA.LOC104823808 Tarenaya hassleriana HOM05D003813 ORTHO05D004557 1.8e-44 182.6 116 77.6
Nitab4.5_0000971g0050 Nicotiana tabacum HOM05D003813 ORTHO05D004557 2.4e-44 182.2 116 76.7
Nitab4.5_0006298g0010 Nicotiana tabacum HOM05D003813 ORTHO05D004557 2.4e-44 182.2 116 76.7
unitig_26.g9578 Utricularia gibba HOM05D003813 ORTHO05D004557 2.4e-44 182.2 116 78.4
MSTRG.27392 Avicennia marina HOM05D003813 ORTHO05D004557 3.1e-44 181.8 116 76.7
Eucgr.H01394 Eucalyptus grandis HOM05D003813 ORTHO05D004557 4.1e-44 181.4 116 77.6
Solyc05g055770.3 Solanum lycopersicum HOM05D003813 ORTHO05D004557 5.4e-44 181.0 116 75.9
Sopen05g034180 Solanum pennellii HOM05D003813 ORTHO05D004557 5.4e-44 181.0 116 75.9
unitig_749.g13493 Utricularia gibba HOM05D003813 ORTHO05D004557 5.4e-44 181.0 116 77.6
Rhsim09G0130400 Rhododendron simsii HOM05D003813 ORTHO05D004557 7.0e-44 180.6 116 76.7
vmacro10403 Vaccinium macrocarpon HOM05D003813 ORTHO05D004557 7.0e-44 180.6 116 76.7
Hund21902 Selenicereus undatus HOM05D003813 ORTHO05D004557 9.1e-44 180.3 116 75.0
HPP92_020238 Vanilla planifolia HOM05D003813 ORTHO05D004557 9.1e-44 180.3 116 73.3
CDE06G0032 Ceratophyllum demersum HOM05D003813 ORTHO05D004557 1.2e-43 179.9 116 76.7
Oeu046890.2 Olea europaea HOM05D003813 ORTHO05D004557 1.6e-43 179.5 116 74.1
PGSC0003DMG400023474 Solanum tuberosum HOM05D003813 ORTHO05D004557 2.0e-43 179.1 116 75.0
MSTRG.8209 Avicennia marina HOM05D003813 ORTHO05D004557 2.7e-43 178.7 116 77.6
CAN.G694.22 Capsicum annuum HOM05D003813 ORTHO05D004557 2.7e-43 178.7 116 75.0
MD13G1060900 Malus domestica HOM05D003813 ORTHO05D004557 2.7e-43 178.7 102 87.3
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 2.7e-43 178.7 116 75.0
Ah.04g159020 Amaranthus hybridus HOM05D003813 ORTHO05D004557 3.5e-43 178.3 114 78.1
CDE02G2989 Ceratophyllum demersum HOM05D003813 ORTHO05D004557 3.5e-43 178.3 116 76.7
THA.LOC104805704 Tarenaya hassleriana HOM05D003813 ORTHO05D004557 5.9e-43 177.6 116 73.3
TPR.G31806 Trifolium pratense HOM05D003813 ORTHO05D004557 5.9e-43 177.6 109 80.7
Oeu062047.1 Olea europaea HOM05D003813 ORTHO05D004557 1.0e-42 176.8 113 77.9
BcaB05g24096 Brassica carinata HOM05D003813 ORTHO05D004557 1.7e-42 176.0 116 72.4
BcaC03g14684 Brassica carinata HOM05D003813 ORTHO05D004557 1.7e-42 176.0 116 72.4
BolC2t08264H Brassica oleracea HOM05D003813 ORTHO05D004557 1.7e-42 176.0 116 72.4
Hund07351 Selenicereus undatus HOM05D003813 ORTHO05D004557 1.7e-42 176.0 116 73.3
Zm00001eb090730 Zea mays HOM05D003813 ORTHO05D004557 2.9e-42 175.3 114 74.6
C02p21240 Brassica napus HOM05D003813 ORTHO05D004557 6.5e-42 174.1 116 71.6
BraA02t06366Z Brassica rapa HOM05D003813 ORTHO05D004557 6.5e-42 174.1 116 71.6
Eucgr.B01418 Eucalyptus grandis HOM05D003813 ORTHO05D004557 6.5e-42 174.1 114 76.3
Sc09g0001440 Simmondsia chinensis HOM05D003813 ORTHO05D004557 8.5e-42 173.7 116 75.0
AT5G36230 Arabidopsis thaliana HOM05D003813 ORTHO05D004557 1.1e-41 173.3 116 72.4
Os11g0414000 Oryza sativa ssp. japonica HOM05D003813 ORTHO05D004557 1.1e-41 173.3 114 74.6
Sp5g19900 Schrenkiella parvula HOM05D003813 ORTHO05D004557 1.1e-41 173.3 116 71.6
Zm00001eb200810 Zea mays HOM05D003813 ORTHO05D004557 1.5e-41 172.9 114 72.8
Aa31LG2G2350 Aethionema arabicum HOM05D003813 ORTHO05D004557 2.5e-41 172.2 117 72.6
AL7G45160 Arabidopsis lyrata HOM05D003813 ORTHO05D004557 3.2e-41 171.8 116 71.6
A02p13100 Brassica napus HOM05D003813 ORTHO05D004557 3.2e-41 171.8 116 70.7
Aa31LG9G17930 Aethionema arabicum HOM05D003813 ORTHO05D004557 5.5e-41 171.0 116 71.6
CARHR056830 Cardamine hirsuta HOM05D003813 ORTHO05D004557 5.5e-41 171.0 116 71.6
Sp7g05930 Schrenkiella parvula HOM05D003813 ORTHO05D004557 7.2e-41 170.6 116 70.7
Haze_04566 Corylus avellana HOM05D003813 ORTHO05D004557 1.6e-40 169.5 171 56.7
CARHR216500 Cardamine hirsuta HOM05D003813 ORTHO05D004557 2.1e-40 169.1 116 69.0
Carub.0002s1075 Capsella rubella HOM05D003813 ORTHO05D004557 4.7e-40 167.9 116 69.0
BcaB02g08039 Brassica carinata HOM05D003813 ORTHO05D004557 8.0e-40 167.2 116 69.8
BcaC08g44332 Brassica carinata HOM05D003813 ORTHO05D004557 8.0e-40 167.2 116 69.8
A05p16340 Brassica napus HOM05D003813 ORTHO05D004557 8.0e-40 167.2 116 69.8
C06p17610 Brassica napus HOM05D003813 ORTHO05D004557 8.0e-40 167.2 116 69.8
BolC6t36955H Brassica oleracea HOM05D003813 ORTHO05D004557 8.0e-40 167.2 116 69.8
BraA05t20541Z Brassica rapa HOM05D003813 ORTHO05D004557 8.0e-40 167.2 116 69.8
AL2G20220 Arabidopsis lyrata HOM05D003813 ORTHO05D004557 1.8e-39 166.0 116 69.0
Carub.0007s3190 Capsella rubella HOM05D003813 ORTHO05D004557 1.8e-39 166.0 117 70.1
Thhalv10004315m.g Eutrema salsugineum HOM05D003813 ORTHO05D004557 4.0e-39 164.9 116 68.1
BcaB06g27011 Brassica carinata HOM05D003813 ORTHO05D004557 5.7e-38 161.0 116 68.1
AagrBONN_evm.TU.Sc2ySwM_228.1258 Anthoceros agrestis HOM05D003813 ORTHO05D004557 7.5e-38 160.6 116 67.2
AT1G65220 Arabidopsis thaliana HOM05D003813 ORTHO05D004557 9.8e-38 160.2 116 66.4
Rhsim02G0249700 Rhododendron simsii HOM05D003813 ORTHO05D004557 9.8e-38 160.2 115 73.9
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 8.3e-37 157.1 100 78.0
Pp3c19_1810 Physcomitrium patens HOM05D003813 ORTHO05D004557 2.7e-35 152.1 116 62.1
Mapoly0005s0128 Marchantia polymorpha HOM05D003813 ORTHO05D004557 3.5e-35 151.8 116 61.2
Pp3c18_18860 Physcomitrium patens HOM05D003813 ORTHO05D004557 1.0e-34 150.2 116 62.1
Lalb_Chr03g0038661 Lupinus albus HOM05D003813 ORTHO05D004557 8.6e-34 147.1 103 74.8
SMO340G0078 Selaginella moellendorffii HOM05D003813 ORTHO05D004557 1.1e-33 146.7 116 59.5
HanXRQChr01g0006971 Helianthus annuus HOM05D003813 ORTHO05D004557 2.5e-33 145.6 123 63.4
TPR.G18384 Trifolium pratense HOM05D003813 ORTHO05D004557 6.1e-32 141.0 93 77.4
Pp3c21_10580 Physcomitrium patens HOM05D003813 ORTHO05D004557 6.8e-31 137.5 106 59.4
CBR_g21840 Chara braunii HOM05D003813 ORTHO05D004557 6.4e-29 131.0 118 54.2
Aqoxy6G02348 Aquilegia oxysepala HOM05D003813 ORTHO05D004557 9.2e-28 127.1 88 75.0
Thhalv10018708m.g Eutrema salsugineum HOM05D003813 ORTHO05D004557 1.4e-23 113.2 101 57.4
CBR_g11137 Chara braunii HOM05D003813 ORTHO05D004557 5.4e-20 101.3 99 51.5
Lsat_1_v5_gn_2_49320 Lactuca sativa HOM05D003813 ORTHO05D004557 7.0e-20 100.9 99 56.6
MD00G1113300 Malus domestica HOM05D003813 ORTHO05D004557 1.7e-18 96.3 58 84.5
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 1.4e-12 76.6 63 63.5
CAN.G96.1 Capsicum annuum HOM05D003813 ORTHO05D004557 1.6e-11 73.2 60 63.3
Cre06.g298350 Chlamydomonas reinhardtii HOM05D003813 ORTHO05D004557 3.0e-10 68.9 119 31.1
Haze_26180 Corylus avellana HOM05D003813 ORTHO05D004557 3.1e-07 58.9 114 31.6
CAN.G1086.2 Capsicum annuum HOM05D003813 ORTHO05D004557 5.2e-07 58.2 49 61.2
FAN23G2692 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.6e-06 55.8 45 62.2


User provided reference genes

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