Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 4.6e-109 397.9 200 100.0
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.8e-105 386.0 200 96.5
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.5e-104 382.9 200 95.5
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 7.6e-104 380.6 191 99.5
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.7e-103 379.4 200 94.5
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.4e-102 375.6 191 97.4
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.2e-102 374.8 191 97.4
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 3.1e-81 305.4 197 72.6
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 3.8e-79 298.5 197 70.6
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.4e-78 296.6 197 75.1
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.9e-78 296.2 199 71.4
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 1.9e-78 296.2 198 72.2
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.1e-77 291.2 197 70.6
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 7.9e-77 290.8 197 68.0
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.4e-76 290.0 199 69.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.8e-76 289.7 197 68.0
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 3.0e-76 288.9 197 70.1
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.6e-75 285.8 197 67.5
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 4.4e-75 285.0 197 68.0
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-74 283.5 197 67.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.2e-74 282.7 197 67.0
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.8e-74 282.3 198 67.7
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.7e-74 282.0 197 66.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 8.2e-74 280.8 197 66.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.4e-73 280.0 197 67.0
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.8e-73 279.6 197 66.5
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 9.1e-73 277.3 200 66.0
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 2.6e-72 275.8 200 64.0
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.8e-71 271.9 197 67.0
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 8.5e-71 270.8 198 65.2
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.4e-70 270.0 199 66.8
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.4e-70 270.0 199 66.8
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 4.2e-70 268.5 200 66.5
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.2e-70 268.5 197 64.0
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 7.2e-70 267.7 199 66.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.1e-69 266.2 199 66.8
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.1e-69 266.2 199 66.8
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.1e-69 266.2 191 65.4
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.7e-69 265.8 197 67.5
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 4.7e-69 265.0 197 61.9
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.3e-68 262.7 199 65.8
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 2.3e-68 262.7 200 63.5
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 3.0e-68 262.3 200 63.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 5.2e-68 261.5 200 64.0
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.0e-67 259.6 197 65.0
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 2.6e-67 259.2 200 63.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 4.4e-67 258.5 193 66.3
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 5.7e-67 258.1 200 62.5
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 5.7e-67 258.1 197 61.9
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 7.4e-67 257.7 203 62.1
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 7.4e-67 257.7 203 62.1
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.3e-66 256.9 200 63.0
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.8e-66 255.8 197 61.9
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.3e-66 254.6 200 63.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 8.2e-66 254.2 197 61.4
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 8.2e-66 254.2 199 64.3
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.4e-65 253.4 200 68.5
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 3.1e-65 252.3 200 60.5
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 4.1e-65 251.9 197 61.4
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 5.3e-65 251.5 200 57.5
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 9.1e-65 250.8 197 60.9
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 9.1e-65 250.8 197 60.9
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.6e-64 249.2 194 61.9
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.6e-64 249.2 198 61.6
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 3.5e-64 248.8 202 59.9
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 5.9e-64 248.1 200 59.0
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 7.7e-64 247.7 200 61.5
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.9e-63 245.7 197 60.4
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.8e-63 245.4 194 61.3
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.1e-62 243.8 200 59.0
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.9e-62 243.0 197 59.9
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.9e-62 243.0 197 59.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.9e-62 243.0 197 57.9
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 4.2e-62 241.9 196 55.6
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 5.5e-62 241.5 200 61.5
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 5.5e-62 241.5 197 60.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 7.2e-62 241.1 196 55.6
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.6e-61 240.0 196 57.1
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.6e-61 240.0 198 59.1
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.7e-61 239.2 197 57.4
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 3.6e-61 238.8 194 59.8
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.6e-61 238.8 198 58.1
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.7e-61 238.4 197 58.9
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.3e-60 236.1 184 63.6
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 3.0e-60 235.7 198 57.6
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 3.0e-60 235.7 192 58.9
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-59 233.4 195 57.9
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.3e-59 232.3 198 59.6
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 5.7e-59 231.5 250 51.2
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.3e-58 230.3 194 57.7
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 1.3e-58 230.3 224 54.5
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 2.2e-58 229.6 224 53.1
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.8e-58 229.2 265 48.3
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 4.8e-58 228.4 230 53.9
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.8e-58 228.4 232 51.7
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 6.3e-58 228.0 192 56.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.4e-57 226.1 195 56.9
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 9.1e-57 224.2 197 56.3
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.2e-56 223.8 223 52.9
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.5e-56 222.2 205 58.5
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 2.2e-55 219.5 171 62.6
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.9e-55 219.2 224 50.9
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 6.5e-55 218.0 145 71.0
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 3.2e-54 215.7 230 48.7
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 2.1e-53 213.0 192 53.6
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.1e-53 213.0 224 48.7
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 3.6e-53 212.2 148 65.5
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.0e-52 210.7 230 49.1
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.4e-52 210.3 230 48.3
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.4e-52 210.3 230 47.8
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 8.8e-52 207.6 231 48.5
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.2e-51 207.2 171 55.6
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.7e-50 203.4 194 46.9
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.8e-50 202.6 147 68.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-48 197.2 136 66.2
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.7e-48 196.1 200 45.5
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 2.7e-48 196.1 144 62.5
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.5e-48 195.7 202 52.5
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 5.9e-48 194.9 150 64.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.5e-46 190.3 193 52.3
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.5e-46 190.3 252 42.5
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 6.8e-44 181.4 172 55.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 8.9e-44 181.0 193 50.3
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.2e-43 180.6 154 57.1
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.6e-43 179.5 197 43.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.6e-43 179.5 197 43.7
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 3.4e-43 179.1 200 55.0
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 3.7e-42 175.6 156 56.4
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 4.9e-42 175.3 200 45.0
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.4e-41 171.8 200 47.0
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.9e-38 163.3 197 40.1
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.5e-38 162.9 189 46.6
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.2e-37 160.6 119 58.0
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.8e-37 159.5 148 54.7
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.0e-36 156.0 191 44.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.2e-34 149.8 117 65.8
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 3.7e-34 149.1 114 62.3
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 4.1e-33 145.6 111 66.7
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 5.4e-33 145.2 114 57.9
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.2e-33 144.4 197 42.1
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 2.7e-32 142.9 198 38.4
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 2.7e-32 142.9 197 36.5
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.3e-31 140.6 151 52.3
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.8e-28 130.2 120 53.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 3.1e-28 129.4 113 54.9
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.2e-27 127.5 112 55.4
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.9e-26 122.1 86 64.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 2.0e-24 116.7 79 70.9
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 3.5e-24 115.9 187 37.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 9.9e-19 97.8 205 31.2
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 3.3e-14 82.8 66 54.5
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.2e-13 80.9 58 72.4
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 2.1e-13 80.1 206 27.2
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.3e-10 70.9 56 66.1
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.7e-07 58.2 49 51.0
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 2.5e-06 56.6 179 26.8
FAN02G3255 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.3e-06 55.8 33 81.8
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 7.3e-06 55.1 50 54.0


User provided reference genes

Program Settings