Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 6.6e-145 517.3 254 100.0
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 7.1e-123 444.1 239 94.1
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 8.1e-119 430.6 283 80.2
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 1.3e-116 423.3 240 87.9
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 8.4e-116 420.6 230 90.0
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 8.4e-116 420.6 230 90.0
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 1.4e-115 419.9 243 85.6
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 2.5e-115 419.1 241 86.3
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 5.5e-115 417.9 240 86.7
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 9.3e-115 417.2 240 87.1
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 1.2e-114 416.8 240 85.8
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 1.6e-114 416.4 240 85.4
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 5.1e-113 411.4 267 79.0
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 6.7e-113 411.0 242 85.1
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 6.7e-113 411.0 240 85.4
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 8.7e-113 410.6 227 89.9
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 8.7e-113 410.6 243 84.4
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 1.1e-112 410.2 243 84.0
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.5e-112 409.8 243 84.4
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 1.5e-112 409.8 243 84.4
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 2.5e-112 409.1 243 84.8
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 2.5e-112 409.1 240 84.6
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 3.3e-112 408.7 243 83.5
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 3.3e-112 408.7 243 84.0
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 4.3e-112 408.3 227 89.0
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 4.3e-112 408.3 254 81.9
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 5.7e-112 407.9 243 84.4
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 5.7e-112 407.9 240 83.3
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 5.7e-112 407.9 227 87.2
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 9.6e-112 407.1 240 83.8
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 9.6e-112 407.1 240 83.3
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 1.3e-111 406.8 240 84.2
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 1.6e-111 406.4 240 84.6
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 2.1e-111 406.0 240 83.8
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 3.7e-111 405.2 240 84.2
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 4.8e-111 404.8 230 85.7
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 4.8e-111 404.8 243 83.5
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 6.3e-111 404.4 228 86.4
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 8.2e-111 404.1 227 87.7
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.1e-110 403.7 240 85.0
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 1.1e-110 403.7 240 83.3
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 1.4e-110 403.3 243 83.5
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 1.8e-110 402.9 243 83.1
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 1.8e-110 402.9 243 83.1
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 1.8e-110 402.9 243 83.1
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 1.8e-110 402.9 243 83.1
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 1.8e-110 402.9 243 83.1
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 4.1e-110 401.7 250 79.6
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 5.3e-110 401.4 240 83.8
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 6.9e-110 401.0 243 82.7
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 9.0e-110 400.6 240 83.3
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 9.0e-110 400.6 240 83.8
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 1.5e-109 399.8 240 81.7
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 5.9e-109 397.9 243 81.9
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 7.6e-109 397.5 227 86.3
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 1.0e-108 397.1 227 85.5
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 1.3e-108 396.7 237 84.4
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 2.9e-108 395.6 243 81.9
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.9e-108 395.6 243 81.5
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 8.4e-108 394.0 262 77.9
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 1.1e-107 393.7 243 81.1
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 1.4e-107 393.3 243 81.5
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 2.5e-107 392.5 240 82.1
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 3.2e-107 392.1 253 81.0
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 4.2e-107 391.7 243 80.7
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 4.2e-107 391.7 230 84.3
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 4.2e-107 391.7 276 74.6
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 5.5e-107 391.3 240 82.1
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 9.3e-107 390.6 254 79.1
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.2e-106 390.2 245 79.6
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 1.9e-104 382.9 227 85.5
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 7.4e-104 380.9 226 83.2
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 2.8e-103 379.0 262 75.2
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 2.8e-103 379.0 230 81.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.7e-103 378.6 261 73.2
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 3.7e-103 378.6 241 84.2
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 3.1e-102 375.6 240 80.8
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 5.3e-102 374.8 240 80.8
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 1.5e-101 373.2 230 79.6
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 2.2e-100 369.4 227 80.2
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 2.2e-100 369.4 212 84.4
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 6.5e-100 367.9 243 75.3
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 7.2e-99 364.4 209 87.6
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 5.1e-97 358.2 243 76.1
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 1.5e-96 356.7 243 75.7
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 6.3e-95 351.3 286 65.4
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.5e-93 346.7 249 73.9
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 1.3e-92 343.6 230 72.6
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.3e-92 343.6 226 75.7
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 1.7e-92 343.2 242 74.0
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 8.5e-92 340.9 240 72.9
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.1e-91 340.5 209 80.9
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.9e-91 339.7 243 69.5
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 2.0e-88 329.7 243 68.3
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 5.7e-88 328.2 227 75.3
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 4.1e-86 322.0 241 66.4
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 5.3e-86 321.6 243 66.7
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 7.0e-86 321.2 230 73.0
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 2.5e-83 312.8 244 70.9
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 1.8e-81 306.6 340 53.2
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 3.7e-79 298.9 220 68.2
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 1.4e-78 297.0 185 77.8
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 1.4e-70 270.4 164 79.9
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 1.4e-70 270.4 226 60.6
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 3.6e-66 255.8 192 71.9
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 3.6e-66 255.8 188 69.7
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 5.2e-65 251.9 230 61.3
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 1.3e-63 247.3 157 78.3
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 1.4e-62 243.8 177 68.4
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.2e-61 240.7 410 41.0
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 4.5e-61 238.8 139 83.5
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 4.7e-58 228.8 120 91.7
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.2e-57 225.3 122 88.5
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.2e-56 224.2 118 90.7
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 2.6e-56 223.0 223 52.5
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 7.0e-46 188.3 111 80.2
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 6.8e-41 171.8 117 75.2
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.1e-38 164.5 110 75.5
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.7e-29 133.3 91 73.6
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 2.7e-29 133.3 193 38.3
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.7e-28 130.6 66 90.9
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.1e-26 123.6 61 98.4
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 6.9e-25 118.6 59 96.6
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.5e-24 117.5 59 96.6
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.3e-23 114.4 63 85.7
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 6.4e-23 112.1 76 73.7
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 4.2e-22 109.4 70 72.9
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.6e-21 107.5 55 94.5
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 2.1e-21 107.1 211 31.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 2.5e-19 100.1 173 34.1
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 2.8e-18 96.7 60 81.7
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 9.9e-16 88.2 159 39.0
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 5.1e-12 75.9 43 83.7
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.6e-10 70.9 33 93.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 2.9e-07 60.1 55 54.5
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.4e-06 57.8 110 32.7
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.3e-06 55.1 119 31.9
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 9.3e-06 55.1 111 33.3
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 9.3e-06 55.1 90 33.3


User provided reference genes

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