Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 7.4e-312 1072.8 543 100.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-303 1045.0 543 98.0
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-285 986.1 535 95.1
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.3e-259 898.7 560 85.5
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.9e-231 803.5 602 73.9
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 3.1e-208 728.8 555 71.2
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-173 613.6 337 95.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.7e-166 590.1 387 84.5
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 4.2e-165 585.5 520 60.8
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.6e-140 502.7 608 49.5
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.1e-131 474.6 535 50.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 4.9e-129 465.7 554 49.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.4e-128 463.4 488 53.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.0e-126 458.0 552 48.2
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 3.1e-123 446.4 485 51.8
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 3.1e-123 446.4 485 51.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 8.9e-123 444.9 521 48.9
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.7e-121 439.5 485 49.5
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.9e-120 437.2 560 45.9
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.6e-119 434.1 488 49.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.6e-119 434.1 564 46.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.1e-119 433.7 555 46.5
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.3e-118 431.0 550 46.2
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.0e-118 429.9 564 45.7
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 3.3e-117 426.4 600 43.5
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 2.1e-116 423.7 516 46.7
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.4e-114 416.4 521 46.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.3e-113 414.5 530 47.9
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 6.4e-113 412.1 514 46.3
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.2e-112 409.8 443 51.2
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.0e-111 405.6 516 46.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 5.1e-110 402.5 430 52.3
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 5.1e-110 402.5 516 45.7
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 8.7e-110 401.7 518 46.3
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.9e-109 400.6 524 44.3
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.5e-109 400.2 584 43.8
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.3e-109 399.8 510 45.1
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 5.6e-109 399.1 502 45.8
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 7.3e-109 398.7 520 45.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 9.6e-109 398.3 416 53.6
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.8e-108 396.7 518 45.2
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.8e-107 394.0 613 41.1
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 6.9e-107 392.1 529 44.6
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.2e-106 391.3 530 45.1
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.2e-106 391.3 559 44.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.6e-106 390.2 549 43.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.6e-106 390.2 547 42.8
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.7e-105 387.5 579 39.9
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.8e-105 386.3 525 43.8
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 6.4e-105 385.6 539 42.1
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.1e-104 384.8 493 43.4
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.2e-104 383.3 509 45.2
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.1e-104 382.1 427 50.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 9.3e-104 381.7 482 45.0
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 2.1e-103 380.6 506 41.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.1e-103 380.6 513 43.5
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.1e-103 380.6 501 44.7
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 7.9e-103 378.6 411 48.9
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.0e-102 376.7 528 43.6
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 3.0e-102 376.7 617 40.2
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 6.6e-102 375.6 465 46.0
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.4e-99 367.9 538 42.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.4e-99 367.1 455 47.0
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.1e-99 366.7 562 42.3
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 4.0e-99 366.3 487 45.8
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.0e-99 366.3 483 43.1
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.2e-98 364.8 545 40.7
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.5e-98 362.8 521 43.4
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 5.8e-98 362.5 450 44.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 7.6e-98 362.1 567 41.6
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 7.6e-98 362.1 474 42.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.2e-97 360.5 527 41.2
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.2e-97 360.5 200 92.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.1e-96 358.2 421 46.6
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 3.2e-96 356.7 562 40.0
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 9.3e-96 355.1 539 41.7
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.1e-95 354.0 589 38.9
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.5e-95 353.2 473 45.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.5e-95 353.2 550 40.9
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 8.7e-94 348.6 582 40.5
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 9.6e-93 345.1 557 38.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.6e-92 344.4 532 40.2
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 8.1e-92 342.0 510 42.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 8.1e-92 342.0 585 37.3
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.4e-91 341.3 406 48.3
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.3e-89 334.7 516 39.9
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.7e-89 334.3 529 39.1
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.9e-88 330.9 464 42.7
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 9.3e-88 328.6 554 39.0
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.5e-85 321.2 529 38.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 4.1e-83 313.2 524 38.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 5.3e-83 312.8 488 38.9
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 4.5e-82 309.7 310 51.3
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 5.9e-82 309.3 453 41.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.2e-80 303.5 455 39.1
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.7e-79 300.4 483 37.7
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-78 298.1 559 34.9
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 8.7e-78 295.4 447 40.0
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.9e-77 294.3 228 60.1
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 5.7e-77 292.7 553 34.9
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 5.7e-77 292.7 553 34.9
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.2e-76 290.8 553 34.7
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.4e-75 287.3 553 34.5
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.4e-75 287.3 553 34.9
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.2e-74 285.0 534 35.8
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 7.7e-74 282.3 559 33.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-73 280.4 523 36.5
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.7e-71 273.9 481 35.8
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.8e-70 271.2 484 35.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.0e-66 257.7 439 39.2
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 2.5e-64 250.8 387 41.9
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.4e-62 245.0 224 56.7
FAN28G1315 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.3e-61 240.4 146 91.1
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.4e-59 235.0 170 64.7
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.5e-56 224.9 505 32.9
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.0e-54 218.8 297 45.5
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.4e-51 207.6 225 47.1
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-48 198.7 138 81.9
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.4e-48 195.7 142 79.6
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 2.6e-45 187.6 140 62.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.5e-45 186.0 417 34.8
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.3e-44 185.3 328 38.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.8e-44 184.1 391 36.6
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 4.0e-38 163.7 338 33.1
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-35 154.8 287 36.9
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.4e-35 154.5 279 35.5
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.2e-34 152.1 241 34.9
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.6e-34 151.8 373 33.8
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.7e-34 151.0 279 34.8
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.7e-34 151.0 233 35.6
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.9e-33 147.5 213 39.0
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.2e-29 135.6 130 50.8
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.7e-29 133.3 276 33.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 5.7e-29 133.3 346 30.1
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.9e-28 131.0 87 64.4
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.9e-28 131.0 87 64.4
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 2.8e-23 114.4 294 28.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-21 109.0 154 44.2
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-21 107.1 248 30.2
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-17 95.5 268 27.6
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 3.0e-17 94.4 262 27.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 3.0e-17 94.4 262 27.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 3.0e-17 94.4 262 27.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-16 92.0 262 26.0
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.5e-16 92.0 262 26.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.5e-08 64.7 55 52.7


User provided reference genes

Program Settings