Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 4.2e-221 771.2 421 100.0
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.2e-180 634.4 390 92.1
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.0e-166 590.5 387 84.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.5e-165 583.9 384 85.2
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.9e-161 572.4 392 83.9
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.3e-158 562.8 387 81.7
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-129 467.6 285 88.8
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 8.4e-129 464.5 401 68.8
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.4e-99 367.5 373 56.8
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.6e-98 363.2 399 54.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.6e-81 305.4 202 83.2
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-75 287.7 167 100.0
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.3e-70 270.4 357 46.2
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.2e-69 268.1 387 43.7
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.5e-69 267.7 321 49.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.0e-69 267.3 318 49.7
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 4.4e-69 266.2 331 46.5
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 2.7e-66 256.9 428 41.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.6e-66 256.1 402 41.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 3.3e-64 250.0 404 41.1
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 7.3e-64 248.8 404 40.8
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.8e-63 246.9 391 44.8
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 8.0e-63 245.4 398 40.5
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 8.9e-62 241.9 325 46.2
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.3e-60 238.0 398 41.7
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.7e-60 237.7 323 45.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.9e-59 234.2 375 40.8
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.1e-58 230.7 411 40.4
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.7e-58 230.3 327 46.2
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.7e-58 230.3 327 46.2
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 6.0e-58 229.2 328 44.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 5.1e-57 226.1 384 43.2
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.5e-56 223.8 374 39.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.3e-56 223.4 328 42.7
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.6e-55 221.1 387 38.8
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.6e-55 221.1 320 43.4
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.8e-55 220.3 139 92.8
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.6e-55 219.9 355 40.3
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.1e-54 218.4 331 42.3
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.1e-54 218.4 324 42.0
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.0e-54 216.5 333 43.5
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.5e-53 214.5 270 46.3
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.4e-53 213.0 323 41.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 7.5e-53 212.2 332 43.1
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.3e-52 211.5 377 39.5
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.2e-52 210.7 374 38.8
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.4e-51 207.2 361 40.2
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.2e-51 206.8 333 40.2
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.1e-50 204.1 333 40.8
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 2.1e-50 204.1 383 38.6
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.0e-49 201.8 341 39.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.7e-49 201.1 250 48.8
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.3e-49 200.7 321 39.3
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 8.6e-49 198.7 317 40.7
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 8.6e-49 198.7 428 34.3
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.9e-48 197.6 383 36.6
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 7.3e-48 195.7 317 38.8
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.1e-47 194.1 391 35.3
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 3.6e-47 193.4 326 39.9
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 8.1e-47 192.2 284 41.2
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.1e-46 191.8 292 40.4
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.1e-46 191.8 264 47.0
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.1e-46 191.8 357 39.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.4e-46 191.4 370 36.5
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.8e-46 191.0 346 37.3
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 6.8e-46 189.1 394 33.8
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 6.8e-46 189.1 331 38.1
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.0e-45 187.6 336 38.1
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.6e-45 187.2 336 38.1
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 7.6e-45 185.7 336 35.7
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 3.8e-44 183.3 336 36.3
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.4e-44 182.6 362 37.3
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 8.4e-44 182.2 325 38.5
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.1e-43 181.8 301 40.5
FAN28G1315 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-43 181.8 140 78.6
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.4e-43 181.4 368 35.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.9e-43 181.0 418 35.2
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.9e-43 181.0 270 42.2
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.4e-43 180.6 369 36.9
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 3.2e-43 180.3 291 40.2
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 5.4e-43 179.5 307 38.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 9.2e-43 178.7 340 35.3
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 9.2e-43 178.7 350 36.9
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.7e-42 177.2 407 33.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 3.5e-42 176.8 342 35.4
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.0e-42 176.0 247 42.5
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 6.0e-42 176.0 350 36.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.3e-41 174.9 403 32.5
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.5e-40 170.6 386 33.9
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 9.6e-40 168.7 306 38.2
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.2e-39 168.3 388 34.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.1e-38 165.2 297 37.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.9e-38 162.5 250 40.8
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 3.4e-37 160.2 367 32.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 4.4e-37 159.8 335 31.9
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 7.6e-37 159.1 410 32.4
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 9.9e-37 158.7 299 37.1
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.9e-36 157.1 312 35.3
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.9e-36 157.1 404 31.9
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.9e-35 154.5 300 35.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.2e-34 151.8 332 32.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.7e-34 150.6 358 33.5
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 3.5e-34 150.2 306 34.6
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 7.8e-34 149.1 328 32.6
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 7.8e-34 149.1 322 32.9
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.8e-34 149.1 314 36.6
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 7.8e-34 149.1 242 40.1
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 5.1e-33 146.4 329 32.2
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.5e-32 144.8 329 32.8
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-32 144.8 329 32.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.3e-32 142.5 270 38.9
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-30 138.3 326 31.9
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.4e-30 138.3 283 35.3
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.1e-30 137.1 369 33.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.0e-29 134.4 325 32.0
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.6e-29 134.0 358 29.6
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 4.5e-29 133.3 296 31.8
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.7e-28 131.3 185 42.2
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.4e-27 127.5 321 29.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 7.9e-26 122.5 317 31.2
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.2e-19 100.1 365 28.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.3e-16 90.5 69 63.8
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.6e-13 80.9 168 38.1
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.7e-12 78.2 146 32.2
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.0e-09 68.9 72 47.2
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.1e-06 57.0 116 30.2


User provided reference genes

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