Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g10040 Fragaria vesca HOM05D000001 ORTHO05D016299 4.6e-129 464.5 231 100.0
FAN23G2245 Fragaria x ananassa HOM05D000001 ORTHO05D016299 2.2e-118 429.1 231 91.8
RcHm_v2.0_Chr2g0095681 Rosa chinensis HOM05D000001 ORTHO05D016299 2.3e-35 153.3 154 50.0
FAN07G0496 Fragaria x ananassa HOM05D000001 ORTHO05D016299 3.4e-31 139.4 189 40.7
Glyma.02G064300 Glycine max HOM05D000001 ORTHO05D016299 3.1e-24 116.3 176 36.4
Glyma.02G064100 Glycine max HOM05D000001 ORTHO05D016299 4.0e-24 115.9 176 36.4
Glyma.02G064400 Glycine max HOM05D000001 ORTHO05D016299 4.0e-24 115.9 176 36.4
VMungo0464G2193 Vigna mungo HOM05D000001 ORTHO05D016299 4.9e-22 109.0 175 33.7
Phvul.006G112900 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 1.1e-21 107.8 201 29.4
TPR.G5913 Trifolium pratense HOM05D000001 ORTHO05D000501 1.4e-21 107.5 201 32.8
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 2.5e-21 106.7 186 33.3
Medtr3g030640 Medicago truncatula HOM05D000001 ORTHO05D000501 3.2e-21 106.3 203 31.0
Glyma.02G064200 Glycine max HOM05D000001 ORTHO05D016299 5.5e-21 105.5 175 33.7
Medtr3g030660 Medicago truncatula HOM05D000001 ORTHO05D000501 1.8e-19 100.5 203 29.6
Psat5g059080 Pisum sativum HOM05D000001 ORTHO05D000501 1.8e-19 100.5 195 29.7
Sed0005369 Sechium edule HOM05D000001 ORTHO05D000501 3.0e-19 99.8 175 32.0
TPR.G28358 Trifolium pratense HOM05D000001 ORTHO05D000501 5.6e-18 95.5 224 29.0
Sed0005085 Sechium edule HOM05D000001 ORTHO05D000501 7.4e-18 95.1 193 29.0
TPR.G13310 Trifolium pratense HOM05D000001 ORTHO05D000501 9.6e-18 94.7 182 31.9
Oeu064402.1 Olea europaea HOM05D000001 ORTHO05D000501 1.6e-17 94.0 193 32.1
Sed0012330 Sechium edule HOM05D054807 ORTHO05D000501 2.8e-17 93.2 186 30.6
AagrBONN_evm.TU.Sc2ySwM_344.5094 Anthoceros agrestis HOM05D000001 ORTHO05D000501 3.7e-17 92.8 182 30.8
TPR.G11011 Trifolium pratense HOM05D000001 ORTHO05D000501 6.2e-17 92.0 204 29.9
CsaV3_3G036400 Cucumis sativus L. HOM05D000001 ORTHO05D000039 1.4e-16 90.9 195 29.7
HanXRQChr08g0231371 Helianthus annuus HOM05D000001 ORTHO05D000501 2.4e-16 90.1 209 29.7
TPR.G10314 Trifolium pratense HOM05D000001 ORTHO05D000501 5.3e-16 89.0 195 30.8
CsaV3_3G041380 Cucumis sativus L. HOM05D000001 ORTHO05D000501 6.9e-16 88.6 193 28.5
Thecc.10G164500 Theobroma cacao HOM05D000001 ORTHO05D000501 6.9e-16 88.6 223 27.4
HanXRQChr08g0231391 Helianthus annuus HOM05D000001 ORTHO05D000501 1.5e-15 87.4 194 27.3
HanXRQChr08g0231581 Helianthus annuus HOM05D000001 ORTHO05D000501 2.0e-15 87.0 194 25.8
TPR.G25368 Trifolium pratense HOM05D000001 ORTHO05D000501 2.6e-15 86.7 197 27.9
Thecc.10G164700 Theobroma cacao HOM05D000001 ORTHO05D000501 3.4e-15 86.3 224 28.6
Aqoxy5G04155 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 4.5e-15 85.9 195 28.7
EL10Ac2g02457 Beta vulgaris HOM05D000001 ORTHO05D038988 7.6e-15 85.1 187 28.3
EL10Ac2g02459 Beta vulgaris HOM05D000001 ORTHO05D038988 7.6e-15 85.1 187 28.3
Glyma.16G028200 Glycine max HOM05D000001 ORTHO05D000501 1.0e-14 84.7 193 27.5
QL03p019094 Quercus lobata HOM05D000001 ORTHO05D000501 1.3e-14 84.3 203 28.6
Aqoxy5G04163 Aquilegia oxysepala HOM05D000001 ORTHO05D021353 2.2e-14 83.6 132 34.1
Glyma.03G194500 Glycine max HOM05D000001 ORTHO05D000501 2.2e-14 83.6 205 27.3
Rhsim12G0135800 Rhododendron simsii HOM05D000001 ORTHO05D000501 2.2e-14 83.6 179 29.1
ClCG10G015160 Citrullus lanatus HOM05D000001 ORTHO05D000501 2.9e-14 83.2 174 26.4
Eucgr.H00686 Eucalyptus grandis HOM05D000001 ORTHO05D000501 2.9e-14 83.2 193 29.0
Mapoly0043s0116 Marchantia polymorpha HOM05D000001 ORTHO05D000501 2.9e-14 83.2 206 25.7
Sed0011654 Sechium edule HOM05D000001 ORTHO05D000501 2.9e-14 83.2 164 29.3
unitig_26.g10301 Utricularia gibba HOM05D000001 ORTHO05D000501 2.9e-14 83.2 193 30.6
Haze_04103 Corylus avellana HOM05D000001 ORTHO05D000501 3.8e-14 82.8 132 34.1
HanXRQChr08g0231661 Helianthus annuus HOM05D000001 ORTHO05D000501 3.8e-14 82.8 186 28.5
Manes.04G084851 Manihot esculenta HOM05D000001 ORTHO05D000501 3.8e-14 82.8 184 30.4
Prupe.8G184700 Prunus persica HOM05D000001 ORTHO05D000501 3.8e-14 82.8 203 27.1
ClCG10G015080 Citrullus lanatus HOM05D000001 ORTHO05D000501 4.9e-14 82.4 183 27.3
Migut.D00765 Erythranthe guttata HOM05D000001 ORTHO05D000501 4.9e-14 82.4 193 24.9
Phvul.006G112700 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 4.9e-14 82.4 181 27.6
Duzib114G0102 Durio zibethinus HOM05D000001 ORTHO05D000501 6.5e-14 82.0 226 28.3
VMungo0331G1324 Vigna mungo HOM05D000001 ORTHO05D000501 6.5e-14 82.0 193 27.5
CsaV3_3G041400 Cucumis sativus L. HOM05D000001 ORTHO05D000501 8.4e-14 81.6 176 27.8
Manes.12G057200 Manihot esculenta HOM05D000001 ORTHO05D000501 8.4e-14 81.6 196 28.1
Sed0025124 Sechium edule HOM05D000001 ORTHO05D000501 8.4e-14 81.6 108 37.0
Lsat_1_v5_gn_9_17140 Lactuca sativa HOM05D000001 ORTHO05D000501 1.9e-13 80.5 209 28.7
CANSAT25G1281 Cannabis sativa HOM05D000001 ORTHO05D000501 2.5e-13 80.1 187 27.8
FvH4_2g17310 Fragaria vesca HOM05D000001 ORTHO05D000501 2.5e-13 80.1 203 25.6
ClCG10G015180 Citrullus lanatus HOM05D000001 ORTHO05D000501 3.2e-13 79.7 171 28.7
Cc02_g08300 Coffea canephora HOM05D000001 ORTHO05D022409 3.2e-13 79.7 204 29.4
Medtr5g086410 Medicago truncatula HOM05D000001 ORTHO05D000501 3.2e-13 79.7 187 28.3
PGSC0003DMG400027453 Solanum tuberosum HOM05D010663 ORTHO05D011474 3.2e-13 79.7 217 30.0
Thecc.10G163400 Theobroma cacao HOM05D000001 ORTHO05D000501 4.2e-13 79.3 223 28.3
Potri.014G174400 Populus trichocarpa HOM05D000001 ORTHO05D000501 5.5e-13 79.0 186 27.4
SMO367G0723 Selaginella moellendorffii HOM05D000001 ORTHO05D000501 5.5e-13 79.0 192 27.1
Duzib114G0387 Durio zibethinus HOM05D000001 ORTHO05D000501 7.1e-13 78.6 230 27.4
Gohir.D07G201400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 7.1e-13 78.6 191 27.2
Gorai.001G226100 Gossypium raimondii HOM05D000001 ORTHO05D000501 7.1e-13 78.6 191 27.2
Ah.03g135020 Amaranthus hybridus HOM05D000001 ORTHO05D000501 9.3e-13 78.2 201 28.4
Duzib133G0742 Durio zibethinus HOM05D000001 ORTHO05D000501 9.3e-13 78.2 191 26.7
Atru.chr6.3496 Acer truncatum HOM05D000001 ORTHO05D000501 1.2e-12 77.8 191 27.2
Gohir.A07G195000 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.2e-12 77.8 191 27.2
Oeu022759.1 Olea europaea HOM05D000001 ORTHO05D000501 1.2e-12 77.8 185 28.6
Lalb_Chr10g0100211 Lupinus albus HOM05D000001 ORTHO05D000501 1.6e-12 77.4 194 26.8
TWI18G1372 Tripterygium wilfordii HOM05D000001 ORTHO05D000501 1.6e-12 77.4 195 26.2
Duzib138G0079 Durio zibethinus HOM05D000001 ORTHO05D000501 2.1e-12 77.0 191 27.7
RcHm_v2.0_Chr6g0281821 Rosa chinensis HOM05D000001 ORTHO05D000501 2.1e-12 77.0 164 29.3
Peaxi162Scf00336g00045 Petunia axillaris HOM05D000001 ORTHO05D000501 2.7e-12 76.6 175 28.6
Glyma.07G059300 Glycine max HOM05D000001 ORTHO05D000501 3.5e-12 76.3 193 26.9
unitig_26.g10300 Utricularia gibba HOM05D000001 ORTHO05D000501 3.5e-12 76.3 187 28.9
Gohir.A11G144400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 4.6e-12 75.9 194 27.8
HPP92_003442 Vanilla planifolia HOM05D000001 ORTHO05D000501 4.6e-12 75.9 193 26.4
VMungo0464G2196 Vigna mungo HOM05D000001 ORTHO05D016299 4.6e-12 75.9 120 32.5
ClCG10G009300 Citrullus lanatus HOM05D000001 ORTHO05D000501 6.0e-12 75.5 198 26.3
TPR.G31836 Trifolium pratense HOM05D000001 ORTHO05D000501 6.0e-12 75.5 142 31.0
Thecc.10G168800 Theobroma cacao HOM05D000001 ORTHO05D000501 7.9e-12 75.1 219 26.9
COL.COLO4_22960 Corchorus olitorius HOM05D000001 ORTHO05D000501 1.0e-11 74.7 188 27.1
Psat4g159000 Pisum sativum HOM05D000001 ORTHO05D000501 1.0e-11 74.7 194 27.3
Thecc.01G205800 Theobroma cacao HOM05D000001 ORTHO05D000501 1.0e-11 74.7 191 25.7
Medtr6g071505 Medicago truncatula HOM05D000001 ORTHO05D000501 1.3e-11 74.3 188 28.7
Cfa000442 Carpinus fangiana HOM05D000001 ORTHO05D000501 1.8e-11 73.9 199 28.6
FAN24G1304 Fragaria x ananassa HOM05D000001 ORTHO05D000501 1.8e-11 73.9 178 28.7
Gorai.007G161700 Gossypium raimondii HOM05D000001 ORTHO05D000501 2.3e-11 73.6 194 27.3
PGR083G2135 Punica granatum HOM05D000001 ORTHO05D000501 2.3e-11 73.6 199 26.6
CSS0003932 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000501 3.0e-11 73.2 142 29.6
Sed0003120 Sechium edule HOM05D000001 ORTHO05D000501 3.0e-11 73.2 172 26.7
vmacro04522 Vaccinium macrocarpon HOM05D000001 ORTHO05D000501 3.0e-11 73.2 196 28.6
GSVIVG01019974001 Vitis vinifera HOM05D000001 ORTHO05D000501 3.0e-11 73.2 196 27.0
PSO017G0450 Papaver somniferum HOM05D000001 ORTHO05D000501 3.9e-11 72.8 211 23.7
PSO675G9274 Papaver somniferum HOM05D000001 ORTHO05D000501 3.9e-11 72.8 211 23.7
Peaxi162Scf01298g00002 Petunia axillaris HOM05D000001 ORTHO05D000501 3.9e-11 72.8 182 25.3
COL.COLO4_22358 Corchorus olitorius HOM05D000001 ORTHO05D000501 5.1e-11 72.4 215 25.6
HanXRQChr08g0210941 Helianthus annuus HOM05D000001 ORTHO05D000501 5.1e-11 72.4 187 26.7
DCAR_018604 Daucus carota HOM05D002283 ORTHO05D005725 6.7e-11 72.0 193 26.4
SGA_v2.0_scaffold205G41769 Striga asiatica HOM05D000001 ORTHO05D000501 6.7e-11 72.0 127 33.9
THA.LOC104815389 Tarenaya hassleriana HOM05D000001 ORTHO05D000501 6.7e-11 72.0 185 26.5
Thecc.10G163200 Theobroma cacao HOM05D000001 ORTHO05D000501 6.7e-11 72.0 214 27.6
PSO170G1155 Papaver somniferum HOM05D002080 ORTHO05D002062 8.7e-11 71.6 152 30.9
MSTRG.12737 Avicennia marina HOM05D000001 ORTHO05D000501 1.1e-10 71.2 186 26.3
Glyma.20G036200 Glycine max HOM05D000001 ORTHO05D000501 1.1e-10 71.2 197 28.4
RcHm_v2.0_Chr3g0455911 Rosa chinensis HOM05D000001 ORTHO05D000501 1.1e-10 71.2 162 30.2
arahy.Tifrunner.gnm1.ann1.7W4W3Z Arachis hypogaea HOM05D000001 ORTHO05D000501 1.5e-10 70.9 188 27.7
Dinv07638 Davidia involucrata HOM05D000001 ORTHO05D000501 1.5e-10 70.9 165 29.7
Haze_03549 Corylus avellana HOM05D000001 ORTHO05D000501 1.9e-10 70.5 206 28.6
Sp7g09390 Schrenkiella parvula HOM05D000001 ORTHO05D000501 1.9e-10 70.5 191 25.1
Migut.N00684 Erythranthe guttata HOM05D000001 ORTHO05D000501 3.3e-10 69.7 186 24.7
Sed0009372 Sechium edule HOM05D000001 ORTHO05D000501 3.3e-10 69.7 191 24.6
Medtr1g048200 Medicago truncatula HOM05D000001 ORTHO05D021353 4.3e-10 69.3 126 31.7
MD05G1152000 Malus domestica HOM05D000001 ORTHO05D000501 5.7e-10 68.9 191 26.2
Os01g0897200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 5.7e-10 68.9 217 27.6
TAR362G0059 Trochodendron aralioides HOM05D000001 ORTHO05D000501 5.7e-10 68.9 158 27.8
Ah.02g110980 Amaranthus hybridus HOM05D000001 ORTHO05D000501 7.4e-10 68.6 212 22.6
AT2G39780 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 7.4e-10 68.6 191 24.6
Cc05_g03730 Coffea canephora HOM05D000001 ORTHO05D000501 7.4e-10 68.6 207 25.6
Cc05_g03770 Coffea canephora HOM05D000001 ORTHO05D000501 7.4e-10 68.6 207 25.1
TWI81G0489 Tripterygium wilfordii HOM05D000001 ORTHO05D000501 7.4e-10 68.6 221 22.2
Haze_06420 Corylus avellana HOM05D003185 ORTHO05D009915 9.7e-10 68.2 145 27.6
Zm00001eb144680 Zea mays HOM05D000001 ORTHO05D000501 1.3e-09 67.8 136 30.9
Actinidia23809 Actinidia chinensis HOM05D000001 ORTHO05D000501 1.6e-09 67.4 142 29.6
Manes.04G080072 Manihot esculenta HOM05D000001 ORTHO05D000501 1.6e-09 67.4 157 33.1
TPR.G30030 Trifolium pratense HOM05D000820 ORTHO05D000760 1.6e-09 67.4 120 28.3
Thecc.10G164900 Theobroma cacao HOM05D000001 ORTHO05D000501 2.8e-09 66.6 204 25.5
Peaxi162Scf00222g00321 Petunia axillaris HOM05D000001 ORTHO05D000501 3.7e-09 66.2 180 29.4
Phvul.004G064100 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 3.7e-09 66.2 132 28.8
QL09p045139 Quercus lobata HOM05D000001 ORTHO05D000501 6.3e-09 65.5 224 23.7
Thecc.10G169300 Theobroma cacao HOM05D008337 ORTHO05D000501 6.3e-09 65.5 128 29.7
Lalb_Chr21g0318791 Lupinus albus HOM05D000001 ORTHO05D000501 8.2e-09 65.1 196 27.6
CiPaw.07G025200 Carya illinoinensis HOM05D000001 ORTHO05D000501 1.8e-08 63.9 129 25.6
Duzib264G0626 Durio zibethinus HOM05D000001 ORTHO05D000501 1.8e-08 63.9 122 36.1
MD10G1146300 Malus domestica HOM05D000001 ORTHO05D000501 2.4e-08 63.5 191 24.6
Rhsim01G0246700 Rhododendron simsii HOM05D000001 ORTHO05D000501 2.4e-08 63.5 185 27.0
Sed0027914 Sechium edule HOM05D000001 ORTHO05D000501 2.4e-08 63.5 210 27.1
AUR62034271 Chenopodium quinoa HOM05D000615 ORTHO05D000447 4.1e-08 62.8 79 38.0
Thecc.10G163600 Theobroma cacao HOM05D000001 ORTHO05D000501 5.3e-08 62.4 203 25.6
Medtr8g013025 Medicago truncatula HOM05D001592 ORTHO05D011714 6.9e-08 62.0 139 30.2
TWI32G0759 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 6.9e-08 62.0 137 28.5
Aqoxy5G02932 Aquilegia oxysepala HOM05D023242 ORTHO05D021350 1.5e-07 60.8 177 24.3
Cc03_g12450 Coffea canephora HOM05D000001 ORTHO05D000501 2.0e-07 60.5 191 25.7
Zm00001eb332050 Zea mays HOM05D000001 ORTHO05D000501 2.0e-07 60.5 199 23.6
CDE09G0541 Ceratophyllum demersum HOM05D000001 ORTHO05D000501 2.6e-07 60.1 142 27.5
Lj3g0013123 Lotus japonicus HOM05D000001 ORTHO05D000501 2.6e-07 60.1 194 24.2
CANSAT25G0184 Cannabis sativa HOM05D000001 ORTHO05D000501 3.4e-07 59.7 128 29.7
Thhalv10027545m.g Eutrema salsugineum HOM05D000001 ORTHO05D000501 3.4e-07 59.7 191 24.1
Phvul.004G056100 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 4.5e-07 59.3 157 26.8
A04p09160 Brassica napus HOM05D000001 ORTHO05D000501 5.9e-07 58.9 191 23.6
BraA04t16609Z Brassica rapa HOM05D000001 ORTHO05D000501 5.9e-07 58.9 191 23.6
C04p43080 Brassica napus HOM05D000001 ORTHO05D000501 7.7e-07 58.5 191 23.6
CANSAT25G2603 Cannabis sativa HOM05D000001 ORTHO05D000501 7.7e-07 58.5 128 29.7
PSO232G0006 Papaver somniferum HOM05D043442 ORTHO05D000501 7.7e-07 58.5 155 26.5
MBI05_g36698_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 1.0e-06 58.2 97 30.9
unitig_0.g425 Utricularia gibba HOM05D000001 ORTHO05D000501 1.7e-06 57.4 156 23.7
SGA_v2.0_scaffold158G37513 Striga asiatica HOM05D000001 ORTHO05D000501 2.9e-06 56.6 218 22.5
CsaV3_7G027100 Cucumis sativus L. HOM05D003048 ORTHO05D003418 3.8e-06 56.2 153 26.1
Dinv44405 Davidia involucrata HOM05D000001 ORTHO05D000501 3.8e-06 56.2 72 37.5
Hund09492 Selenicereus undatus HOM05D000001 ORTHO05D000501 5.0e-06 55.8 231 22.1
PSO384G0348 Papaver somniferum HOM05D028390 ORTHO05D021353 8.5e-06 55.1 131 28.2


User provided reference genes

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