Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 0.0e+00 1239.2 629 100.0
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 0.0e+00 1226.5 640 97.8
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 0.0e+00 1215.7 629 98.1
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 0.0e+00 1214.5 629 97.9
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 0.0e+00 1199.1 648 94.6
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 0.0e+00 1153.3 629 93.2
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.0e-200 701.0 370 97.0
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.0e-186 657.5 637 59.5
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.5e-185 653.7 639 58.1
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 7.3e-169 598.2 641 53.8
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 4.7e-168 595.5 640 53.4
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 2.6e-166 589.7 621 52.8
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 7.6e-166 588.2 639 53.1
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 3.2e-164 582.8 624 53.0
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.6e-163 578.9 624 53.0
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 6.0e-163 578.6 624 51.8
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.7e-162 577.0 642 51.1
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.7e-162 577.0 638 52.7
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 3.0e-162 576.2 622 53.5
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 8.6e-162 574.7 647 52.1
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 5.6e-161 572.0 643 51.6
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.1e-160 570.1 643 51.0
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 6.2e-160 568.5 643 50.9
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 8.1e-160 568.2 639 51.6
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 4.0e-159 565.8 643 51.0
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 3.4e-158 562.8 624 52.2
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 3.4e-158 562.8 651 50.2
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.1e-156 557.8 642 50.5
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 3.0e-154 549.7 637 50.4
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 3.9e-154 549.3 647 50.5
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 8.7e-154 548.1 626 50.2
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 8.7e-154 548.1 644 49.4
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.5e-153 546.6 663 50.2
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 5.6e-153 545.4 642 50.2
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.6e-152 543.9 645 50.4
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 6.2e-152 542.0 632 48.9
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.1e-151 541.2 646 50.3
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 2.4e-151 540.0 627 48.8
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 4.0e-151 539.3 638 49.4
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 5.3e-151 538.9 640 48.4
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.9e-149 533.1 650 49.2
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 2.4e-148 530.0 592 52.0
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.2e-147 527.7 624 49.8
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-147 527.3 627 49.4
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 4.6e-147 525.8 627 48.5
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 7.9e-147 525.0 645 48.2
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.0e-146 523.1 662 48.6
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 3.0e-146 523.1 629 48.5
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 5.1e-146 522.3 624 48.4
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 9.6e-145 518.1 628 48.4
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 6.2e-144 515.4 634 47.5
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 6.2e-144 515.4 658 47.9
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 9.0e-143 511.5 615 48.3
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.2e-142 511.1 610 49.3
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.0e-142 510.4 615 48.3
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 2.6e-142 510.0 654 47.9
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 9.3e-140 501.5 625 46.6
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.6e-139 500.7 619 47.5
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 4.6e-139 499.2 697 44.0
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 6.0e-139 498.8 544 52.4
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 2.3e-138 496.9 719 42.4
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 3.0e-138 496.5 637 46.9
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 1.1e-137 494.6 642 46.3
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.5e-137 494.2 622 49.5
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 1.9e-137 493.8 627 46.3
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 5.6e-137 492.3 644 45.0
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 9.6e-137 491.5 628 46.0
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.6e-136 490.7 615 47.2
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.2e-136 488.8 631 46.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.1e-135 488.0 555 50.6
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.4e-135 487.6 633 45.8
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.4e-135 486.9 586 48.1
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 5.3e-135 485.7 734 41.1
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 9.0e-135 485.0 728 41.3
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.5e-134 484.2 608 46.2
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.5e-134 484.2 608 46.2
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.0e-134 483.8 627 45.9
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 2.6e-134 483.4 690 43.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 5.8e-134 482.3 637 46.2
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.0e-133 481.5 537 52.0
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.3e-133 481.1 621 45.6
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 1.7e-133 480.7 518 51.7
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 3.8e-133 479.6 643 44.3
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.4e-132 477.6 617 46.2
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.9e-132 477.2 661 44.3
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 4.2e-132 476.1 622 47.4
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 5.5e-132 475.7 648 46.1
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 7.1e-132 475.3 624 46.6
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 7.9e-131 471.9 627 42.9
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.0e-130 469.9 627 45.5
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 3.9e-130 469.5 604 45.7
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 5.1e-130 469.2 626 44.9
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-129 467.2 707 42.1
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.3e-128 462.2 590 48.6
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 8.2e-128 461.8 642 43.9
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.1e-127 461.5 616 45.1
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.3e-125 454.5 643 43.5
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 3.8e-125 453.0 617 44.4
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.5e-124 450.3 624 45.8
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 3.2e-124 449.9 621 44.6
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 5.5e-124 449.1 617 44.4
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 5.5e-124 449.1 525 50.3
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 7.2e-124 448.7 637 44.0
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 9.3e-124 448.4 614 45.0
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 1.6e-123 447.6 624 44.9
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.0e-122 444.9 588 46.8
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 5.1e-122 442.6 624 44.6
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 8.7e-122 441.8 623 43.7
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 8.7e-122 441.8 623 43.8
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.5e-121 440.3 624 44.4
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 5.7e-121 439.1 625 44.3
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 4.5e-118 429.5 617 42.9
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 2.5e-116 423.7 630 41.7
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 4.2e-116 422.9 624 42.8
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.1e-115 420.6 629 43.1
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.0e-114 418.3 567 44.6
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 3.9e-114 416.4 663 41.0
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.6e-113 413.7 623 42.2
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 3.7e-112 409.8 557 43.1
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 2.4e-111 407.1 654 40.2
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 5.9e-110 402.5 640 40.9
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 5.9e-110 402.5 618 41.1
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.2e-109 400.6 442 52.0
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 2.9e-109 400.2 628 41.1
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.9e-108 397.5 621 41.4
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.4e-105 386.3 617 41.3
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 9.7e-105 385.2 628 40.1
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 3.5e-102 376.7 586 43.5
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 4.5e-102 376.3 611 37.8
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.3e-101 374.8 634 40.4
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 4.2e-100 369.8 625 40.8
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 1.3e-96 358.2 642 38.9
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.7e-94 350.5 645 38.6
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 2.7e-94 350.5 632 38.1
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 4.4e-89 333.2 571 38.2
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 2.8e-88 330.5 632 37.7
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 9.1e-87 325.5 585 35.9
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 9.1e-87 325.5 585 35.9
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-86 324.7 584 35.6
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.0e-85 322.0 575 35.3
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 8.0e-83 312.4 610 34.8
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.3e-80 302.8 584 38.2
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 5.0e-77 293.1 442 44.8
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 6.1e-75 286.2 617 34.5
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.3e-74 284.3 298 52.7
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.4e-73 280.0 379 45.1
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 5.4e-71 273.1 526 34.0
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 5.0e-69 266.5 442 39.4
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.2e-67 259.6 331 47.7
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 5.0e-61 240.0 441 38.3
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.8e-58 231.5 346 43.6
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.8e-58 231.5 261 49.4
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 4.4e-57 226.9 203 61.1
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 9.9e-57 225.7 269 49.8
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 7.3e-52 209.5 265 45.3
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 8.1e-51 206.1 345 39.1
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-49 201.8 254 48.0
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 7.1e-47 193.0 262 45.8
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 2.4e-42 177.9 186 49.5
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 3.1e-42 177.6 194 51.5
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.8e-40 170.6 176 51.1
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 6.2e-35 153.3 320 34.4
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 9.0e-34 149.4 638 23.4
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.4e-33 147.5 165 50.9
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 4.9e-32 143.7 578 25.1
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 3.3e-28 131.0 305 32.5
Prupe.7G186500 Prunus persica HOM05D003539 ORTHO05D004111 4.8e-27 127.1 103 69.9
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 9.0e-26 122.9 100 61.0
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.8e-24 117.5 554 23.6
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.1e-23 115.9 305 30.2
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-23 115.2 150 44.7
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-21 108.2 187 34.8
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 8.7e-21 106.3 195 37.4
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.9e-20 105.1 117 53.8
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 6.2e-19 100.1 183 37.7
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 5.3e-18 97.1 78 57.7
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 4.2e-15 87.4 248 32.3
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 6.3e-11 73.6 74 47.3
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 6.3e-11 73.6 74 47.3
RcHm_v2.0_Chr2g0096821 Rosa chinensis HOM05D003539 ORTHO05D004111 3.1e-10 71.2 46 76.1
Ciclev10010647m.g Citrus clementina HOM05D003539 ORTHO05D004111 2.6e-09 68.2 93 49.5
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 3.4e-09 67.8 179 31.8
RcHm_v2.0_Chr2g0096831 Rosa chinensis HOM05D003539 ORTHO05D004111 3.2e-07 61.2 103 33.0
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 2.7e-06 58.2 163 26.4
GSVIVG01026438001 Vitis vinifera HOM05D003539 ORTHO05D004111 2.7e-06 58.2 46 63.0


User provided reference genes

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