Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 3.2e-84 315.1 163 100.0
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 3.2e-60 235.3 147 87.8
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 3.9e-58 228.4 144 86.8
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 4.1e-55 218.4 153 79.1
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.1e-55 218.4 153 79.1
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.7e-54 214.2 164 76.8
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.7e-54 214.2 141 85.1
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.7e-54 214.2 141 85.1
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.3e-53 213.4 153 77.1
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 5.0e-53 211.5 141 84.4
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.9e-52 209.5 153 75.8
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 4.2e-52 208.4 153 74.5
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 9.4e-52 207.2 153 74.5
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.2e-51 206.8 155 72.3
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 1.6e-51 206.5 153 75.2
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.7e-51 205.7 153 73.9
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 2.7e-51 205.7 153 73.2
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 3.6e-51 205.3 153 73.9
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 3.6e-51 205.3 153 73.9
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 3.6e-51 205.3 153 74.5
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 4.7e-51 204.9 153 73.9
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 4.7e-51 204.9 153 73.2
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 4.7e-51 204.9 153 73.9
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 6.1e-51 204.5 153 74.5
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 6.1e-51 204.5 153 73.9
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 8.0e-51 204.1 153 73.9
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 8.0e-51 204.1 153 73.2
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 8.0e-51 204.1 153 73.2
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 8.0e-51 204.1 153 73.2
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 8.0e-51 204.1 153 73.2
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 8.0e-51 204.1 153 73.2
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 8.0e-51 204.1 153 73.2
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.0e-50 203.8 153 73.2
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 1.0e-50 203.8 153 73.9
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 1.8e-50 203.0 153 73.9
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 1.8e-50 203.0 153 73.9
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 1.8e-50 203.0 153 73.9
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.8e-50 203.0 144 79.2
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 1.8e-50 203.0 153 73.9
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.8e-50 203.0 153 73.9
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.8e-50 203.0 153 72.5
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 2.3e-50 202.6 153 73.2
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.3e-50 202.6 155 73.5
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.3e-50 202.6 153 72.5
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 3.9e-50 201.8 153 71.9
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 5.2e-50 201.4 153 73.2
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 5.2e-50 201.4 153 72.5
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 5.2e-50 201.4 153 71.9
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 5.2e-50 201.4 153 72.5
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 5.2e-50 201.4 153 73.2
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 6.7e-50 201.1 153 73.2
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 6.7e-50 201.1 153 71.2
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 6.7e-50 201.1 153 71.2
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 8.8e-50 200.7 153 72.5
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 8.8e-50 200.7 153 73.2
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 8.8e-50 200.7 153 73.2
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 8.8e-50 200.7 153 73.2
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 8.8e-50 200.7 153 72.5
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 8.8e-50 200.7 153 71.2
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 1.1e-49 200.3 153 73.2
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 1.1e-49 200.3 153 73.2
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.1e-49 200.3 153 72.5
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.1e-49 200.3 153 71.9
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 1.5e-49 199.9 153 71.9
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 2.0e-49 199.5 153 71.2
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 2.0e-49 199.5 153 71.9
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 2.0e-49 199.5 153 71.9
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 2.0e-49 199.5 153 71.9
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 2.6e-49 199.1 172 66.9
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 2.6e-49 199.1 153 71.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 2.6e-49 199.1 153 71.2
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 71.2
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 70.6
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 70.6
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 71.9
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 71.2
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 71.9
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 71.9
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 3.3e-49 198.7 153 73.2
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.4e-49 198.4 153 71.2
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 4.4e-49 198.4 153 70.6
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 4.4e-49 198.4 153 71.2
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 4.4e-49 198.4 153 71.2
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 4.4e-49 198.4 153 70.6
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 4.4e-49 198.4 153 71.2
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 5.7e-49 198.0 153 71.9
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 5.7e-49 198.0 153 71.2
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 5.7e-49 198.0 153 69.9
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 5.7e-49 198.0 155 71.6
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 5.7e-49 198.0 153 69.9
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 5.7e-49 198.0 153 71.2
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 7.4e-49 197.6 153 69.9
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 7.4e-49 197.6 153 70.6
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 7.4e-49 197.6 153 69.9
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 7.4e-49 197.6 155 71.0
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.7e-49 197.2 153 70.6
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 1.3e-48 196.8 153 69.9
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.3e-48 196.8 153 69.9
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.3e-48 196.8 153 69.3
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.3e-48 196.8 153 70.6
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.7e-48 196.4 169 63.3
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 1.7e-48 196.4 153 71.2
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 2.2e-48 196.1 153 69.9
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.2e-48 196.1 153 71.2
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 2.8e-48 195.7 153 71.2
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 2.8e-48 195.7 153 71.2
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 3.7e-48 195.3 153 70.6
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 3.7e-48 195.3 153 70.6
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 4.8e-48 194.9 153 71.2
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 4.8e-48 194.9 153 69.3
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 4.8e-48 194.9 153 71.2
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 4.8e-48 194.9 149 71.8
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 6.3e-48 194.5 153 71.2
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 8.2e-48 194.1 153 68.0
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 1.1e-47 193.7 153 71.2
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.1e-47 193.7 153 68.0
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 1.4e-47 193.4 153 69.9
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 1.4e-47 193.4 153 67.3
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 1.8e-47 193.0 153 69.9
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 1.8e-47 193.0 153 69.9
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 2.4e-47 192.6 153 67.3
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 4.1e-47 191.8 176 63.6
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 4.1e-47 191.8 153 68.6
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 5.3e-47 191.4 153 69.3
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 5.3e-47 191.4 153 69.3
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 7.0e-47 191.0 155 63.9
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 7.0e-47 191.0 153 68.6
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 7.0e-47 191.0 155 65.2
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 7.0e-47 191.0 155 63.9
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 9.1e-47 190.7 153 69.3
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 9.1e-47 190.7 153 69.3
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 9.1e-47 190.7 153 68.6
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.2e-46 190.3 153 67.3
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 1.2e-46 190.3 153 67.3
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.2e-46 190.3 153 69.3
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 2.0e-46 189.5 141 74.5
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 2.6e-46 189.1 153 66.7
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 2.6e-46 189.1 153 66.0
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 3.5e-46 188.7 153 68.6
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 4.5e-46 188.3 153 68.0
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 1.3e-45 186.8 153 65.4
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 2.9e-45 185.7 153 64.7
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 2.9e-45 185.7 155 65.8
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 3.8e-45 185.3 153 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 6.5e-45 184.5 155 65.8
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 8.5e-45 184.1 153 64.1
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 8.5e-45 184.1 153 66.0
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 1.5e-44 183.3 153 64.7
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 3.6e-43 178.7 153 61.4
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 6.8e-42 174.5 153 63.4
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 8.8e-42 174.1 153 63.4
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 2.6e-41 172.6 153 60.1
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.4e-41 172.2 140 67.9
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.7e-41 171.4 153 61.4
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 9.7e-41 170.6 153 59.5
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 4.8e-40 168.3 155 59.4
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.8e-39 166.4 153 61.4
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 3.1e-39 165.6 153 58.2
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 6.5e-37 157.9 156 55.1
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.4e-34 150.2 95 83.2
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 3.4e-33 145.6 154 53.9
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 9.8e-33 144.1 143 60.8
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 6.3e-32 141.4 102 73.5
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 3.1e-31 139.0 87 83.9
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 3.5e-30 135.6 85 82.4
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.9e-28 129.8 143 56.6
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 1.5e-25 120.2 114 57.9
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 3.1e-18 95.9 52 90.4
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 4.4e-17 92.0 73 72.6
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 1.7e-16 90.1 52 82.7
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 2.2e-16 89.7 51 88.2
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 3.2e-15 85.9 49 87.8
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 4.3e-12 75.5 112 41.1
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 2.8e-11 72.8 68 63.2
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 6.8e-10 68.2 69 60.9
FvH4_5g38682 Fragaria vesca HOM05D000002 ORTHO05D197771 5.8e-09 65.1 42 73.8
FvH4_6g36661 Fragaria vesca HOM05D000002 ORTHO05D000001 5.8e-09 65.1 42 73.8
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.6e-06 57.0 47 63.8
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.6e-06 57.0 47 63.8


User provided reference genes

Program Settings