Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g05300 Fragaria vesca HOM05D000056 ORTHO05D000019 3.5e-71 271.6 140 100.0
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 1.4e-35 153.3 88 93.2
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 9.0e-35 150.6 88 92.0
FAN14G5343 Fragaria x ananassa HOM05D000056 ORTHO05D000019 2.4e-11 72.8 240 28.8
FAN05G2466 Fragaria x ananassa HOM05D000056 ORTHO05D000019 6.9e-11 71.2 246 27.6
FAN05G4724 Fragaria x ananassa HOM05D000056 ORTHO05D000019 6.9e-11 71.2 246 27.6
FvH4_6g25140 Fragaria vesca HOM05D000056 ORTHO05D000019 1.5e-10 70.1 238 28.6
QL07p006707 Quercus lobata HOM05D000056 ORTHO05D000019 2.6e-10 69.3 58 55.2
QL07p007131 Quercus lobata HOM05D000056 ORTHO05D000019 3.4e-10 68.9 58 55.2
QL07p007407 Quercus lobata HOM05D000056 ORTHO05D000019 5.9e-10 68.2 79 46.8
QL07p007473 Quercus lobata HOM05D000056 ORTHO05D000019 5.9e-10 68.2 79 46.8
Prupe.7G043500 Prunus persica HOM05D000056 ORTHO05D000019 7.6e-10 67.8 138 33.3
QL07p006803 Quercus lobata HOM05D000056 ORTHO05D000019 1.0e-09 67.4 79 45.6
QL07p007156 Quercus lobata HOM05D000056 ORTHO05D000019 1.0e-09 67.4 79 45.6
QL07p007545 Quercus lobata HOM05D000056 ORTHO05D000019 1.7e-09 66.6 55 58.2
MD00G1049100 Malus domestica HOM05D000056 ORTHO05D000019 2.2e-09 66.2 55 60.0
FvH4_4g02910 Fragaria vesca HOM05D000056 ORTHO05D000019 2.9e-09 65.9 69 50.7
Medtr7g060310 Medicago truncatula HOM05D000056 ORTHO05D000019 3.8e-09 65.5 55 61.8
Dinv08478 Davidia involucrata HOM05D000056 ORTHO05D000019 5.0e-09 65.1 55 56.4
Sabra06G0029300 Salix brachista HOM05D000056 ORTHO05D000019 5.0e-09 65.1 90 45.6
ECA248G0725 Erigeron canadensis HOM05D000056 ORTHO05D000019 8.5e-09 64.3 58 55.2
FAN02G1085 Fragaria x ananassa HOM05D000056 ORTHO05D000019 8.5e-09 64.3 51 62.7
RcHm_v2.0_Chr2g0125011 Rosa chinensis HOM05D000056 ORTHO05D000019 8.5e-09 64.3 59 57.6
Prupe.7G045800 Prunus persica HOM05D000056 ORTHO05D000019 1.1e-08 63.9 56 58.9
QL07p007277 Quercus lobata HOM05D000056 ORTHO05D000019 1.1e-08 63.9 55 56.4
QL07p006917 Quercus lobata HOM05D000056 ORTHO05D000019 1.4e-08 63.5 55 56.4
QL07p007513 Quercus lobata HOM05D000056 ORTHO05D000019 1.4e-08 63.5 55 56.4
QL07p007576 Quercus lobata HOM05D000056 ORTHO05D000019 1.4e-08 63.5 55 56.4
CiPaw.09G044500 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.5e-08 62.8 55 58.2
CiPaw.09G044800 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.5e-08 62.8 79 44.3
CiPaw.09G171900 Carya illinoinensis HOM05D000056 ORTHO05D000019 3.2e-08 62.4 126 34.9
Medtr7g060105 Medicago truncatula HOM05D000096 ORTHO05D000045 3.2e-08 62.4 53 58.5
CiPaw.09G181300 Carya illinoinensis HOM05D000056 ORTHO05D000019 4.2e-08 62.0 79 44.3
Medtr7g060020 Medicago truncatula HOM05D000056 ORTHO05D000019 4.2e-08 62.0 52 59.6
QL07p007586 Quercus lobata HOM05D000056 ORTHO05D000019 4.2e-08 62.0 55 52.7
Medtr7g060115 Medicago truncatula HOM05D000056 ORTHO05D000019 5.5e-08 61.6 50 62.0
Prupe.7G046000 Prunus persica HOM05D000056 ORTHO05D000019 5.5e-08 61.6 132 32.6
QL07p007558 Quercus lobata HOM05D000056 ORTHO05D000019 5.5e-08 61.6 55 56.4
CiPaw.09G045200 Carya illinoinensis HOM05D000056 ORTHO05D000019 7.2e-08 61.2 79 44.3
Haze_20121 Corylus avellana HOM05D000056 ORTHO05D000019 7.2e-08 61.2 193 27.5
Lsat_1_v5_gn_5_159461 Lactuca sativa HOM05D000056 ORTHO05D000019 7.2e-08 61.2 58 51.7
Medtr7g060260 Medicago truncatula HOM05D000056 ORTHO05D000019 7.2e-08 61.2 55 58.2
Prupe.8G076000 Prunus persica HOM05D000056 ORTHO05D000019 7.2e-08 61.2 56 55.4
Cfa016711 Carpinus fangiana HOM05D000056 ORTHO05D000019 9.3e-08 60.8 79 44.3
QL07p006658 Quercus lobata HOM05D000056 ORTHO05D000019 9.3e-08 60.8 52 55.8
QL07p007690 Quercus lobata HOM05D000056 ORTHO05D000019 9.3e-08 60.8 55 56.4
Dinv08475 Davidia involucrata HOM05D000056 ORTHO05D000019 1.2e-07 60.5 55 54.5
Lj1C1106T5 Lonicera japonica HOM05D000056 ORTHO05D000019 1.2e-07 60.5 110 35.5
CiPaw.09G045300 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.6e-07 60.1 76 46.1
CiPaw.09G181400 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.6e-07 60.1 142 32.4
HanXRQChr13g0392031 Helianthus annuus HOM05D000056 ORTHO05D000019 1.6e-07 60.1 58 55.2
HanXRQChr13g0393631 Helianthus annuus HOM05D000056 ORTHO05D000019 1.6e-07 60.1 58 53.4
Medtr7g059510 Medicago truncatula HOM05D000056 ORTHO05D000019 1.6e-07 60.1 55 54.5
Prupe.7G045900 Prunus persica HOM05D000056 ORTHO05D000019 1.6e-07 60.1 52 59.6
Dinv01528 Davidia involucrata HOM05D000056 ORTHO05D000019 2.1e-07 59.7 55 52.7
Haze_19733 Corylus avellana HOM05D000056 ORTHO05D000019 2.7e-07 59.3 55 54.5
Dinv08477 Davidia involucrata HOM05D000056 ORTHO05D000019 2.7e-07 59.3 55 52.7
Phvul.004G055000 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 2.7e-07 59.3 52 57.7
QL07p007342 Quercus lobata HOM05D000056 ORTHO05D000019 2.7e-07 59.3 51 54.9
QL07p007599 Quercus lobata HOM05D000056 ORTHO05D000019 2.7e-07 59.3 52 55.8
Cfa016714 Carpinus fangiana HOM05D000056 ORTHO05D000019 3.6e-07 58.9 79 43.0
HanXRQChr13g0392041 Helianthus annuus HOM05D000056 ORTHO05D000019 3.6e-07 58.9 127 32.3
Prupe.8G075900 Prunus persica HOM05D000056 ORTHO05D000019 3.6e-07 58.9 52 61.5
Cfa016722 Carpinus fangiana HOM05D000056 ORTHO05D000019 4.6e-07 58.5 55 54.5
CiPaw.15G121800 Carya illinoinensis HOM05D000056 ORTHO05D000019 4.6e-07 58.5 79 44.3
HanXRQChr14g0429871 Helianthus annuus HOM05D000056 ORTHO05D000019 4.6e-07 58.5 75 48.0
Lsat_1_v5_gn_5_159420 Lactuca sativa HOM05D000056 ORTHO05D000019 4.6e-07 58.5 58 51.7
MD02G1233700 Malus domestica HOM05D000056 ORTHO05D000019 4.6e-07 58.5 55 52.7
MD07G1070100 Malus domestica HOM05D000056 ORTHO05D000019 4.6e-07 58.5 55 52.7
MD12G1022100 Malus domestica HOM05D000056 ORTHO05D000019 4.6e-07 58.5 60 51.7
QL07p007092 Quercus lobata HOM05D000056 ORTHO05D000019 4.6e-07 58.5 55 54.5
Atru.chr1.1417 Acer truncatum HOM05D000056 ORTHO05D000019 6.1e-07 58.2 47 61.7
Cfa016700 Carpinus fangiana HOM05D000056 ORTHO05D000019 6.1e-07 58.2 52 55.8
Cfa016710 Carpinus fangiana HOM05D000056 ORTHO05D000019 6.1e-07 58.2 189 27.5
CiPaw.09G044900 Carya illinoinensis HOM05D000056 ORTHO05D000019 7.9e-07 57.8 79 41.8
Ca_21516_v3 Cicer arietinum L. HOM05D000056 ORTHO05D000019 7.9e-07 57.8 55 52.7
Haze_19722 Corylus avellana HOM05D000056 ORTHO05D000019 7.9e-07 57.8 52 55.8
Duzib093G1690 Durio zibethinus HOM05D000056 ORTHO05D000019 7.9e-07 57.8 55 49.1
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 7.9e-07 57.8 55 52.7
Thecc.05G141100 Theobroma cacao HOM05D000056 ORTHO05D000019 7.9e-07 57.8 55 49.1
Haze_19723 Corylus avellana HOM05D000056 ORTHO05D000019 1.0e-06 57.4 52 53.8
Dinv01875 Davidia involucrata HOM05D000056 ORTHO05D000019 1.0e-06 57.4 122 32.0
Dinv01927 Davidia involucrata HOM05D000056 ORTHO05D000019 1.0e-06 57.4 120 32.5
Gorai.007G354000 Gossypium raimondii HOM05D000056 ORTHO05D000019 1.0e-06 57.4 52 51.9
QL07p012299 Quercus lobata HOM05D000056 ORTHO05D000019 1.0e-06 57.4 55 54.5
QL12p010522 Quercus lobata HOM05D000056 ORTHO05D000019 1.0e-06 57.4 55 52.7
Atru.chr1.1424 Acer truncatum HOM05D000056 ORTHO05D000019 1.3e-06 57.0 55 52.7
Cpa.g.sc5.199 Carica papaya HOM05D000056 ORTHO05D000019 1.3e-06 57.0 78 43.6
Cfa016712 Carpinus fangiana HOM05D000056 ORTHO05D000019 1.3e-06 57.0 76 43.4
CiPaw.03G078700 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.3e-06 57.0 79 41.8
CiPaw.09G045000 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.3e-06 57.0 79 43.0
Dinv01873 Davidia involucrata HOM05D000056 ORTHO05D000019 1.3e-06 57.0 120 32.5
Dinv01926 Davidia involucrata HOM05D000056 ORTHO05D000019 1.3e-06 57.0 117 33.3
Glyma.05G076600 Glycine max HOM05D000056 ORTHO05D000019 1.3e-06 57.0 52 55.8
Lsat_1_v5_gn_5_159361 Lactuca sativa HOM05D000056 ORTHO05D000019 1.3e-06 57.0 55 49.1
Phvul.004G068700 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 1.3e-06 57.0 52 53.8
QL07p007701 Quercus lobata HOM05D000056 ORTHO05D000019 1.3e-06 57.0 52 55.8
Cfa016701 Carpinus fangiana HOM05D000056 ORTHO05D000019 1.8e-06 56.6 78 42.3
Cfa016704 Carpinus fangiana HOM05D000056 ORTHO05D000019 1.8e-06 56.6 52 53.8
CiPaw.10G038300 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.8e-06 56.6 55 54.5
ECA248G1749 Erigeron canadensis HOM05D000056 ORTHO05D000019 1.8e-06 56.6 51 56.9
FvH4_4g02920 Fragaria vesca HOM05D000056 ORTHO05D000019 1.8e-06 56.6 51 60.8
Glyma.05G076400 Glycine max HOM05D000056 ORTHO05D000019 1.8e-06 56.6 55 52.7
Gohir.A11G308500 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.8e-06 56.6 76 39.5
HanXRQChr13g0393641 Helianthus annuus HOM05D000056 ORTHO05D000019 1.8e-06 56.6 51 56.9
QL07p006690 Quercus lobata HOM05D000056 ORTHO05D000019 1.8e-06 56.6 55 52.7
QL07p007168 Quercus lobata HOM05D000056 ORTHO05D000019 1.8e-06 56.6 55 52.7
Cfa016720 Carpinus fangiana HOM05D000056 ORTHO05D000019 2.3e-06 56.2 59 50.8
CiPaw.10G038200 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.3e-06 56.2 55 54.5
Dinv00847 Davidia involucrata HOM05D000056 ORTHO05D000019 2.3e-06 56.2 122 30.3
HanXRQChr13g0393661 Helianthus annuus HOM05D000056 ORTHO05D000019 2.3e-06 56.2 51 56.9
QL07p006831 Quercus lobata HOM05D000056 ORTHO05D000019 2.3e-06 56.2 55 54.5
QL07p007225 Quercus lobata HOM05D000056 ORTHO05D000019 2.3e-06 56.2 55 54.5
QL07p007456 Quercus lobata HOM05D000056 ORTHO05D000019 2.3e-06 56.2 86 37.2
QL07p007682 Quercus lobata HOM05D000056 ORTHO05D000019 2.3e-06 56.2 55 52.7
Sabra06G0028800 Salix brachista HOM05D000056 ORTHO05D000019 2.3e-06 56.2 52 50.0
TAR623G0613 Trochodendron aralioides HOM05D000056 ORTHO05D000019 2.3e-06 56.2 76 42.1
TAR623G1121 Trochodendron aralioides HOM05D000056 ORTHO05D000019 2.3e-06 56.2 76 42.1
Atru.chr1.1480 Acer truncatum HOM05D000056 ORTHO05D000019 3.0e-06 55.8 79 39.2
Cfa016723 Carpinus fangiana HOM05D000056 ORTHO05D000019 3.0e-06 55.8 53 52.8
Dinv04740 Davidia involucrata HOM05D000056 ORTHO05D000019 3.0e-06 55.8 55 52.7
Gohir.A11G308600 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.0e-06 55.8 52 50.0
Gorai.007G354100 Gossypium raimondii HOM05D000056 ORTHO05D000019 3.0e-06 55.8 52 51.9
Lsat_1_v5_gn_5_159381 Lactuca sativa HOM05D000056 ORTHO05D000019 3.0e-06 55.8 58 51.7
Sc13g0001230 Simmondsia chinensis HOM05D000056 ORTHO05D000019 3.0e-06 55.8 52 51.9
TPR.G7764 Trifolium pratense HOM05D000056 ORTHO05D000019 3.0e-06 55.8 55 54.5
Cfa016716 Carpinus fangiana HOM05D000056 ORTHO05D000019 3.9e-06 55.5 58 48.3
CiPaw.10G038400 Carya illinoinensis HOM05D000056 ORTHO05D000019 3.9e-06 55.5 55 50.9
Ca_24056_v3 Cicer arietinum L. HOM05D000056 ORTHO05D000019 3.9e-06 55.5 119 31.9
Gohir.A11G309000 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.9e-06 55.5 76 39.5
Nitab4.5_0000515g0100 Nicotiana tabacum HOM05D000056 ORTHO05D000019 3.9e-06 55.5 52 53.8
Nitab4.5_0005442g0010 Nicotiana tabacum HOM05D000056 ORTHO05D000019 3.9e-06 55.5 52 53.8
CiPaw.09G044600 Carya illinoinensis HOM05D000056 ORTHO05D000019 5.1e-06 55.1 89 38.2
Dinv01592 Davidia involucrata HOM05D000056 ORTHO05D000019 5.1e-06 55.1 55 52.7
Dinv02851 Davidia involucrata HOM05D000056 ORTHO05D000019 5.1e-06 55.1 55 52.7
ECA248G2693 Erigeron canadensis HOM05D001296 ORTHO05D003826 5.1e-06 55.1 58 46.6
HanXRQChr15g0466611 Helianthus annuus HOM05D000056 ORTHO05D000019 5.1e-06 55.1 87 37.9
Nitab4.5_0000515g0170 Nicotiana tabacum HOM05D000056 ORTHO05D000019 5.1e-06 55.1 52 53.8
Nitab4.5_0005306g0020 Nicotiana tabacum HOM05D000056 ORTHO05D000019 5.1e-06 55.1 52 53.8
ECA233G1642 Erigeron canadensis HOM05D000056 ORTHO05D000019 6.7e-06 54.7 97 33.0
Hma1.2p1_0005F.1_g004350 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 6.7e-06 54.7 143 29.4
QL07p006922 Quercus lobata HOM05D000056 ORTHO05D000019 6.7e-06 54.7 55 54.5
QL07p012225 Quercus lobata HOM05D000056 ORTHO05D000019 6.7e-06 54.7 55 52.7
TPR.G31282 Trifolium pratense HOM05D000056 ORTHO05D000019 6.7e-06 54.7 51 58.8
VMungo0464G0160 Vigna mungo HOM05D000056 ORTHO05D000019 6.7e-06 54.7 48 56.2
Cfa016718 Carpinus fangiana HOM05D000056 ORTHO05D000019 8.7e-06 54.3 58 50.0
Cfa016724 Carpinus fangiana HOM05D000056 ORTHO05D000019 8.7e-06 54.3 57 49.1
Haze_19727 Corylus avellana HOM05D000056 ORTHO05D000019 8.7e-06 54.3 55 49.1
Gohir.D11G324100 Gossypium hirsutum HOM05D000056 ORTHO05D000019 8.7e-06 54.3 52 50.0
Medtr7g060160 Medicago truncatula HOM05D000056 ORTHO05D000019 8.7e-06 54.3 52 51.9
Potri.006G042300 Populus trichocarpa HOM05D000056 ORTHO05D000019 8.7e-06 54.3 52 50.0


User provided reference genes

Program Settings