Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.4e-121 438.3 221 100.0
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.9e-119 432.6 221 98.6
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 6.2e-115 417.5 219 95.9
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 3.5e-102 375.2 191 97.4
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.8e-101 372.9 191 97.9
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.4e-98 362.5 191 93.7
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.2e-97 360.1 191 93.2
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 6.1e-78 294.7 191 71.7
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 3.3e-76 288.9 191 70.2
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 1.7e-75 286.6 192 71.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.8e-75 285.8 192 71.4
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 5.3e-74 281.6 191 70.2
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 5.3e-74 281.6 190 73.2
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.2e-73 280.4 192 70.3
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.2e-73 280.4 191 68.1
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.5e-73 280.0 191 67.5
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 2.6e-73 279.3 191 69.6
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.9e-72 275.8 191 67.5
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 3.8e-72 275.4 191 67.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 6.5e-72 274.6 191 67.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.1e-71 273.9 191 67.0
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.2e-71 272.3 191 66.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 4.2e-71 271.9 191 66.5
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.2e-71 271.9 191 67.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 5.5e-71 271.6 189 67.7
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 3.6e-70 268.9 191 67.0
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.9e-69 265.4 191 65.4
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.1e-68 263.8 191 63.4
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.5e-68 263.5 191 63.9
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.3e-68 262.3 191 66.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.7e-67 260.0 193 65.8
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.7e-67 260.0 193 65.8
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 8.2e-67 257.7 191 62.8
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.1e-66 257.3 193 65.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.1e-66 257.3 193 65.8
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.8e-66 256.5 194 64.9
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.4e-66 256.1 191 61.3
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.4e-66 256.1 193 65.8
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.4e-66 256.1 193 65.8
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.6e-65 253.4 193 65.3
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 2.0e-65 253.1 194 62.9
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.6e-65 252.7 191 62.3
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 7.7e-65 251.1 190 66.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.2e-64 249.6 191 64.9
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.9e-64 249.2 202 60.9
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 5.0e-64 248.4 194 61.9
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 6.5e-64 248.1 194 61.3
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.5e-63 246.1 194 60.8
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 2.5e-63 246.1 194 61.3
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 4.2e-63 245.4 191 59.2
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 5.5e-63 245.0 194 60.8
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 5.5e-63 245.0 191 59.7
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 5.5e-63 245.0 194 61.3
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 7.2e-63 244.6 191 62.3
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 9.4e-63 244.2 194 60.8
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 9.4e-63 244.2 194 60.8
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.2e-62 243.8 193 63.2
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.1e-62 243.0 194 61.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.7e-62 242.7 191 60.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.6e-62 242.3 194 60.3
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 6.1e-62 241.5 189 62.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 8.0e-62 241.1 191 59.7
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 3.0e-61 239.2 194 58.8
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 8.8e-61 237.7 191 59.2
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 8.8e-61 237.7 191 59.2
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.1e-60 237.3 197 58.4
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 3.3e-60 235.7 194 58.8
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 3.3e-60 235.7 194 59.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 5.7e-60 235.0 194 57.2
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.7e-60 235.0 191 66.5
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 5.7e-60 235.0 192 58.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 9.7e-60 234.2 190 57.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 9.7e-60 234.2 191 55.5
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.3e-59 233.8 191 55.5
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 2.8e-59 232.6 191 58.6
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.8e-59 231.9 191 59.2
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.8e-59 231.9 191 59.2
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.4e-58 230.3 195 56.9
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.4e-58 230.3 191 59.7
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.4e-58 230.3 190 56.8
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.8e-58 229.9 192 57.3
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 4.1e-58 228.8 192 57.8
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.3e-58 228.4 191 55.5
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 5.3e-58 228.4 192 56.8
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 7.0e-58 228.0 191 60.7
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.2e-57 227.3 194 56.7
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-57 227.3 191 58.1
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 4.5e-57 225.3 192 56.8
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 1.0e-56 224.2 178 61.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.2e-56 223.0 195 55.9
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.1e-55 220.7 208 57.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.1e-55 220.7 192 59.4
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.5e-55 220.3 259 48.3
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.9e-55 219.9 220 53.2
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 3.2e-55 219.2 218 53.7
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 5.5e-55 218.4 241 50.2
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.6e-54 216.9 224 53.1
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.1e-54 216.5 150 68.0
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.7e-54 215.3 223 50.7
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 8.0e-54 214.5 165 63.6
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 8.0e-54 214.5 148 66.9
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.0e-53 214.2 191 55.5
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.3e-53 213.0 217 52.5
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 8.8e-53 211.1 224 48.7
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.5e-52 210.3 192 53.6
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 7.5e-52 208.0 218 50.5
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 9.8e-52 207.6 231 49.4
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.8e-51 206.1 193 48.7
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 6.3e-51 204.9 224 47.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.6e-49 200.3 166 55.4
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.0e-49 199.9 147 67.3
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.0e-49 199.9 224 48.2
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.7e-49 199.5 224 47.3
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.7e-49 199.5 224 46.9
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.5e-49 199.1 136 67.6
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 7.7e-49 198.0 144 63.9
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.6e-46 190.3 191 46.1
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 2.1e-46 189.9 193 52.3
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.2e-44 184.1 196 51.0
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.2e-44 184.1 144 63.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.7e-43 180.3 193 50.8
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.8e-43 179.5 154 56.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 2.8e-43 179.5 245 41.6
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.9e-41 171.8 192 43.2
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.9e-41 171.8 192 43.2
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 2.3e-40 169.9 166 53.6
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 5.0e-40 168.7 191 46.1
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 7.3e-39 164.9 150 55.3
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.4e-37 160.6 191 52.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 4.0e-37 159.1 191 41.4
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.8e-37 158.3 191 45.5
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.2e-36 157.5 119 55.5
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.7e-35 153.7 191 44.5
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 4.9e-35 152.1 183 45.4
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.6e-33 147.1 114 59.6
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 5.9e-33 145.2 142 51.4
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 3.0e-32 142.9 111 64.9
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.9e-31 140.2 151 52.3
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 4.3e-31 139.0 109 59.6
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.3e-31 138.3 111 63.1
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.2e-30 137.5 194 38.1
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.6e-30 137.1 193 36.3
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.3e-29 133.3 191 40.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 7.5e-28 128.3 113 54.0
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 8.3e-27 124.8 112 53.6
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.4e-26 123.2 86 65.1
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.2e-25 120.9 115 51.3
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 7.3e-23 111.7 187 36.4
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 5.2e-21 105.5 73 68.5
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.6e-17 94.0 200 31.5
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 2.8e-14 83.2 66 56.1
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 5.2e-13 79.0 176 29.0
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.9e-10 70.5 52 71.2
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.3e-07 59.7 50 62.0
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.3e-07 58.5 49 53.1
FAN02G3255 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.7e-06 55.8 33 81.8
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 8.1e-06 55.1 179 26.3


User provided reference genes

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