Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.7e-128 460.7 230 100.0
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.2e-90 335.5 225 80.0
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 3.5e-84 315.5 205 82.9
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 7.7e-76 287.7 199 79.4
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.5e-74 283.5 205 76.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.4e-74 280.8 197 77.7
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 8.8e-72 274.2 193 77.2
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 5.4e-69 265.0 204 71.1
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 2.0e-68 263.1 208 70.2
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.5e-66 256.9 208 68.3
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 5.2e-64 248.4 170 77.6
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.7e-60 236.1 212 62.3
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 4.5e-60 235.3 209 60.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 4.5e-60 235.3 188 67.6
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.0e-59 234.2 183 68.9
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.3e-59 233.8 182 68.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.7e-59 233.4 172 71.5
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.7e-59 233.4 172 71.5
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.7e-59 233.4 187 67.4
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.3e-59 233.0 166 71.7
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 8.6e-59 231.1 162 73.5
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.5e-58 229.6 188 68.1
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.5e-58 229.6 187 67.4
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 4.3e-58 228.8 204 60.3
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 7.3e-58 228.0 191 67.0
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 7.3e-58 228.0 170 69.4
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 7.3e-58 228.0 165 67.9
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.3e-58 228.0 165 67.9
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.2e-57 227.3 178 67.4
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.1e-57 226.5 182 63.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 3.6e-57 225.7 208 58.7
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 3.6e-57 225.7 184 65.2
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 4.7e-57 225.3 196 62.2
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 8.0e-57 224.6 184 66.3
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.0e-57 224.6 203 59.6
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 8.0e-57 224.6 188 61.2
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.0e-56 224.2 166 71.1
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.0e-56 224.2 166 71.1
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.0e-56 224.2 189 64.6
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.4e-56 223.8 167 67.7
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.4e-56 223.8 166 68.7
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.1e-56 222.6 190 62.6
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 4.0e-56 222.2 189 63.5
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 4.0e-56 222.2 174 67.8
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 4.0e-56 222.2 184 64.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 6.8e-56 221.5 187 63.6
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 8.9e-56 221.1 163 69.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 8.9e-56 221.1 189 62.4
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 8.9e-56 221.1 188 60.1
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.2e-55 220.7 188 60.6
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.2e-55 220.7 195 60.0
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.2e-55 220.7 187 63.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.2e-55 220.7 162 69.1
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.5e-55 220.3 187 64.2
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.0e-55 219.9 190 63.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.0e-55 219.9 173 67.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 3.4e-55 219.2 198 60.6
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.4e-55 219.2 186 61.3
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 5.8e-55 218.4 162 69.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 5.8e-55 218.4 203 58.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.3e-54 217.2 163 68.7
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.3e-54 217.2 184 62.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.2e-54 216.5 166 68.1
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.2e-54 216.5 202 59.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 4.9e-54 215.3 166 66.3
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 6.4e-54 214.9 165 66.1
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.4e-53 213.8 173 65.3
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.4e-53 213.8 186 61.3
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.9e-53 213.4 194 57.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.4e-53 213.0 173 65.3
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 4.1e-53 212.2 184 61.4
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.1e-53 212.2 165 66.1
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 9.2e-53 211.1 194 57.7
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.2e-52 210.7 190 57.9
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.2e-52 210.7 164 66.5
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.6e-52 210.3 186 59.7
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 4.6e-52 208.8 189 58.2
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 7.8e-52 208.0 186 59.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.7e-51 206.8 188 56.9
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 5.0e-51 205.3 163 62.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 5.0e-51 205.3 204 58.3
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 5.0e-51 205.3 177 62.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 5.0e-51 205.3 188 56.9
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.6e-51 204.9 200 56.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 8.6e-51 204.5 203 58.1
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 8.6e-51 204.5 165 63.6
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.1e-50 204.1 204 57.4
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.1e-50 204.1 214 56.1
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-50 203.8 207 56.0
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.5e-50 203.0 200 58.0
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.5e-50 203.0 164 63.4
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 3.3e-50 202.6 164 63.4
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 3.3e-50 202.6 164 63.4
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 4.3e-50 202.2 164 65.2
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.6e-49 200.3 224 50.4
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.4e-48 197.2 224 49.6
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 2.3e-48 196.4 160 72.5
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.7e-46 190.3 213 52.1
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.9e-46 189.5 188 54.8
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-45 187.6 123 80.5
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 7.8e-44 181.4 157 61.1
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 5.1e-43 178.7 101 88.1
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.9e-42 176.8 164 56.1
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.5e-42 176.4 164 56.1
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-41 174.1 164 54.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 8.1e-41 171.4 158 55.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.4e-40 170.6 164 54.3
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 7.5e-39 164.9 171 53.8
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.9e-37 160.2 179 52.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.1e-37 158.3 206 39.8
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 2.7e-36 156.4 182 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.5e-34 150.6 182 44.0
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.9e-34 150.2 160 51.9
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.5e-34 147.9 116 70.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 9.5e-34 147.9 205 38.0
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 3.6e-33 146.0 161 52.2
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 6.2e-33 145.2 172 50.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.2e-28 131.0 152 44.1
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 7.8e-28 128.3 85 70.6
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 7.8e-28 128.3 75 84.0
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.1e-27 125.6 96 62.5
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 4.3e-26 122.5 138 51.4
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.2e-20 104.4 100 52.0
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.5e-18 97.4 56 83.9
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.3e-18 96.3 67 68.7
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.4e-16 90.9 56 75.0
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 4.0e-16 89.4 70 55.7
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 5.3e-16 89.0 100 48.0
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 3.3e-10 69.7 59 61.0
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 3.7e-09 66.2 133 36.8
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 6.2e-09 65.5 48 56.2
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 7.6e-07 58.5 178 28.7
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-06 57.8 36 77.8


User provided reference genes

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