Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-150 536.2 270 100.0
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-100 370.2 200 95.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-97 360.5 200 93.5
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 7.1e-97 357.8 200 92.5
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-94 350.1 200 91.0
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.2e-85 317.8 221 80.5
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.5e-81 306.2 202 83.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.1e-64 250.0 224 64.3
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.1e-64 248.4 267 58.4
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 3.8e-42 176.0 296 40.9
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.5e-41 174.1 227 48.9
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.9e-41 173.7 226 48.2
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.0e-34 151.4 187 48.1
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 6.6e-34 148.7 214 43.0
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 4.3e-33 146.0 209 43.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 7.3e-33 145.2 221 43.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-32 144.1 188 47.3
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-32 144.1 188 47.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.6e-32 144.1 211 42.2
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 3.1e-31 139.8 200 43.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 5.2e-31 139.0 215 41.9
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.8e-31 138.7 210 44.8
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.5e-30 137.5 212 38.7
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.4e-30 136.3 183 45.4
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 4.4e-30 136.0 207 43.0
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.3e-29 134.4 200 42.5
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.3e-29 134.4 215 40.9
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.7e-29 134.0 209 40.7
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.9e-29 133.3 215 40.5
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.7e-29 132.9 188 45.2
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.7e-29 132.9 180 44.4
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 6.4e-29 132.1 157 47.8
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.1e-28 131.3 229 40.2
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.1e-28 131.3 184 43.5
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.9e-28 130.6 160 46.2
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.9e-28 130.6 203 40.9
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 2.4e-28 130.2 135 51.9
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 3.2e-28 129.8 155 52.3
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 5.4e-28 129.0 136 50.7
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.4e-28 129.0 149 45.6
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 5.4e-28 129.0 230 38.7
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 7.0e-28 128.6 260 33.8
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.0e-28 128.6 183 43.7
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 7.0e-28 128.6 212 40.1
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 9.2e-28 128.3 161 46.0
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.6e-27 127.5 156 46.8
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.6e-27 127.5 200 39.0
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.0e-27 127.1 192 42.7
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.5e-27 126.3 199 41.2
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.6e-27 125.9 184 39.7
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 4.6e-27 125.9 139 48.9
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 6.0e-27 125.6 191 40.3
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.3e-26 124.4 204 38.2
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.3e-26 123.6 172 43.6
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 2.3e-26 123.6 210 37.6
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.3e-26 123.6 164 43.9
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.9e-26 122.9 139 46.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 8.6e-26 121.7 140 48.6
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.1e-25 121.3 139 47.5
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.1e-25 121.3 218 37.6
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.1e-25 121.3 134 52.2
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.5e-25 120.9 175 42.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.5e-25 120.9 210 40.0
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 2.5e-25 120.2 183 39.3
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.3e-25 119.4 139 46.8
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 4.3e-25 119.4 188 43.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 4.3e-25 119.4 154 44.2
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 4.3e-25 119.4 140 48.6
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 5.6e-25 119.0 170 41.2
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 7.3e-25 118.6 190 39.5
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.2e-24 117.9 215 37.7
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.2e-24 117.9 201 37.8
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.6e-24 117.5 216 37.0
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.6e-24 117.5 205 41.5
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.1e-24 117.1 194 39.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 4.7e-24 115.9 161 42.2
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 4.7e-24 115.9 207 37.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 4.7e-24 115.9 155 41.9
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 8.1e-24 115.2 129 51.2
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 8.1e-24 115.2 234 35.5
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.4e-23 114.4 207 34.8
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 5.2e-23 112.5 153 45.8
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 8.9e-23 111.7 134 49.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.6e-22 110.2 189 39.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 5.8e-22 109.0 209 34.4
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.8e-22 109.0 212 34.4
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.5e-22 108.6 189 38.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 7.5e-22 108.6 213 34.7
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 9.8e-22 108.2 135 43.7
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 9.8e-22 108.2 164 40.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.7e-21 106.3 189 37.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 3.7e-21 106.3 172 37.8
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 6.4e-21 105.5 157 43.9
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.2e-20 103.2 158 43.0
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 9.2e-20 101.7 143 42.0
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.6e-19 100.9 158 40.5
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.7e-19 100.1 214 30.8
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.7e-19 100.1 214 30.8
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 3.5e-19 99.8 214 32.2
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.5e-19 99.8 214 30.4
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 7.8e-19 98.6 132 43.2
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.0e-18 98.2 156 37.8
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.0e-18 98.2 214 30.4
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.0e-18 98.2 269 31.2
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.3e-18 97.8 190 35.8
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.3e-18 97.8 209 30.6
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.7e-18 97.4 223 31.4
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 6.6e-18 95.5 156 38.5
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.5e-17 94.4 145 37.9
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 7.3e-17 92.0 82 57.3
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.1e-16 90.5 133 42.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.6e-16 89.7 125 47.2
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 8.1e-16 88.6 104 47.1
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.1e-15 88.2 156 38.5
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.8e-15 87.4 156 37.8
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.3e-15 87.0 113 41.6
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 5.8e-14 82.4 173 32.9
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.9e-12 77.4 113 38.9
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.6e-06 57.0 135 29.6


User provided reference genes

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