Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1695.6 838 100.0
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1614.4 838 95.6
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1584.3 848 93.3
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1510.4 847 88.7
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1350.5 843 79.8
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1330.9 830 80.8
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1256.9 866 73.2
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1256.5 859 74.3
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1255.0 845 74.9
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1243.0 837 74.7
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1238.8 821 75.8
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1232.6 848 73.5
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1231.9 773 77.6
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1230.3 756 78.6
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1228.4 873 72.3
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1226.1 785 76.6
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1225.7 789 75.7
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1223.0 789 75.4
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1221.8 767 77.2
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1219.5 811 74.4
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1216.4 789 75.2
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1215.3 769 77.0
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1214.5 836 72.4
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1212.6 829 72.5
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1208.0 832 72.7
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1208.0 815 73.3
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1206.8 813 72.7
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1206.8 857 71.1
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1196.4 774 75.7
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1195.3 840 72.5
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1193.7 810 73.0
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 817 72.7
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 769 75.0
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 756 75.7
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1187.2 818 72.5
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1184.9 838 70.6
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1182.9 767 75.1
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1182.9 783 73.8
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1182.2 786 73.4
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1179.9 836 71.1
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1178.7 753 75.4
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1178.3 779 74.2
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1177.2 832 70.7
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 761 75.8
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1176.0 785 73.9
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1174.5 815 71.8
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1174.1 792 73.1
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1171.0 765 75.3
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 790 73.3
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1169.8 776 73.5
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1166.8 806 71.6
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1166.4 827 70.7
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 790 72.8
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1164.8 831 70.5
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1163.7 822 71.2
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1161.4 766 73.9
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1160.6 856 69.4
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 829 68.9
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1157.9 819 70.5
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1157.9 857 69.0
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1151.3 843 69.8
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1138.3 844 67.2
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1135.2 817 69.5
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1129.4 811 69.2
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1129.4 819 69.0
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1128.2 820 69.4
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1127.5 758 71.9
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1124.8 822 67.9
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1124.4 816 69.2
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1123.2 824 68.2
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1122.5 816 69.4
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1122.5 822 67.9
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1120.9 815 69.1
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1120.5 820 68.7
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1111.3 822 67.3
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1100.5 702 77.4
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1097.8 826 69.2
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1096.6 834 65.6
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1095.9 764 70.7
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1094.0 799 68.0
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1091.3 788 70.9
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 1.1e-311 1073.2 713 74.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.9e-311 1071.6 819 66.9
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 2.8e-309 1065.1 698 74.5
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 2.4e-308 1062.0 707 73.3
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 1.7e-306 1055.8 768 69.0
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 5.5e-305 1050.8 814 66.0
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 1.4e-300 1036.2 675 75.6
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 6.7e-295 1017.3 755 67.8
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 5.7e-294 1014.2 627 78.6
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.1e-292 1010.0 911 60.0
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 3.1e-284 981.9 697 69.4
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.5e-278 963.0 763 61.2
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 2.5e-273 945.7 752 60.2
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 5.0e-266 921.4 769 58.5
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.3e-253 880.2 618 71.2
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 6.6e-242 841.3 647 64.0
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.1e-239 833.9 691 63.1
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 8.1e-232 807.7 638 63.0
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-210 736.9 690 53.8
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 4.3e-201 705.7 535 65.8
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 2.1e-163 580.5 809 42.0
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 6.6e-149 532.3 354 66.7
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 4.1e-143 513.1 607 49.4
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.4e-127 460.7 353 63.2
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 6.7e-85 319.7 263 60.8
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.8e-80 303.9 287 57.8
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 4.2e-63 247.3 239 56.5
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.7e-62 243.8 261 53.3
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 1.0e-61 242.7 148 75.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 5.9e-49 200.3 122 75.4
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 3.4e-44 184.5 140 66.4
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 3.5e-41 174.5 139 64.0
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 8.0e-38 163.3 111 68.5
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.1e-26 126.3 84 69.0
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 3.1e-21 108.2 109 48.6
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 5.2e-21 107.5 151 42.4
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 4.9e-19 100.9 62 75.8
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 2.7e-17 95.1 56 80.4
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 9.5e-15 86.7 95 53.7
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 6.8e-13 80.5 45 77.8
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.9e-11 75.1 43 79.1
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 6.6e-08 63.9 41 73.2
TWI23G1065 Tripterygium wilfordii HOM05D000161 ORTHO05D414009 1.1e-07 63.2 111 43.2
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.6e-06 59.3 38 71.1
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.6e-06 58.2 46 63.0


User provided reference genes

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