Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.5e-303 1043.5 524 100.0
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.0e-298 1026.2 524 97.5
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 7.7e-297 1023.1 524 98.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.0e-296 1022.7 524 96.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.1e-290 1002.7 526 96.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 9.4e-279 963.0 532 90.4
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 4.8e-275 950.7 531 89.3
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.0e-272 943.0 531 88.9
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 4.7e-270 934.1 527 88.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.0e-269 932.9 527 87.9
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.2e-268 929.5 524 87.2
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.2e-268 929.5 521 87.7
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.0e-268 928.7 524 87.6
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.1e-266 921.0 525 86.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.1e-266 921.0 525 86.7
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.0e-265 918.7 523 87.0
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.0e-265 918.7 523 87.2
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.0e-265 918.7 523 87.2
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.5e-265 917.9 523 86.6
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 3.5e-265 917.9 522 86.4
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 4.5e-265 917.5 534 84.3
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.5e-265 917.5 524 86.6
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 5.9e-265 917.1 524 87.0
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 5.9e-265 917.1 523 86.0
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 5.9e-265 917.1 525 87.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 5.9e-265 917.1 524 86.6
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-264 916.0 521 87.1
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.3e-264 916.0 524 86.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 2.2e-264 915.2 521 87.1
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.2e-264 915.2 523 87.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 3.8e-264 914.4 529 86.0
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 5.0e-264 914.1 566 81.8
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 5.0e-264 914.1 521 86.9
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 5.0e-264 914.1 524 86.5
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 6.5e-264 913.7 529 85.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 6.5e-264 913.7 529 86.0
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.5e-263 911.8 529 85.6
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.5e-263 911.8 523 86.0
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 3.2e-263 911.4 521 86.8
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 4.2e-263 911.0 523 85.7
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.5e-263 910.6 521 86.8
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 7.2e-263 910.2 523 85.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.2e-262 909.4 503 88.9
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.6e-262 909.1 519 85.9
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.6e-262 909.1 523 85.3
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 4.7e-262 907.5 523 85.5
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 8.0e-262 906.7 522 85.2
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 8.0e-262 906.7 524 85.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.0e-261 906.4 492 88.8
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.4e-261 906.0 519 86.3
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.3e-261 905.2 523 86.4
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.0e-261 904.8 557 81.1
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.0e-261 904.8 524 84.5
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.2e-260 902.9 521 86.0
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.0e-260 902.1 528 84.5
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 3.4e-260 901.4 493 88.2
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 3.4e-260 901.4 532 83.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 5.7e-260 900.6 521 85.0
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 5.7e-260 900.6 529 83.9
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.7e-259 899.0 521 84.8
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.2e-259 898.7 523 83.7
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.7e-259 897.9 521 84.3
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 3.7e-259 897.9 522 84.1
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 3.7e-259 897.9 529 84.1
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 2.4e-258 895.2 493 88.2
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.1e-258 894.8 523 84.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 5.4e-258 894.0 519 84.4
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 7.0e-258 893.6 523 83.9
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 9.2e-258 893.3 521 84.3
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.2e-257 892.9 523 83.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.2e-257 892.9 523 83.9
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.2e-257 892.9 523 83.9
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.7e-257 891.7 524 83.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.7e-257 891.7 521 84.8
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 3.5e-257 891.3 521 83.9
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 3.5e-257 891.3 521 83.9
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.5e-257 891.3 503 86.7
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 4.5e-257 891.0 493 87.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 5.9e-257 890.6 521 83.9
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 5.9e-257 890.6 521 83.9
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 7.7e-257 890.2 521 84.1
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.3e-256 888.6 493 87.0
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.9e-256 888.3 521 84.6
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 3.8e-256 887.9 524 82.4
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 8.6e-256 886.7 522 82.8
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 8.6e-256 886.7 493 88.0
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.6e-254 882.5 521 82.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.8e-254 881.7 524 81.9
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.8e-254 881.7 527 82.0
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 2.8e-254 881.7 526 82.3
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.8e-253 879.0 532 82.0
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.3e-253 878.6 547 79.5
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 5.2e-253 877.5 493 87.2
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.7e-251 872.5 534 81.1
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 3.7e-251 871.3 525 81.9
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 8.3e-251 870.2 530 80.9
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.8e-250 869.0 522 81.6
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.4e-250 867.5 493 84.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 9.2e-250 866.7 525 81.1
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.9e-247 859.0 494 85.0
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.9e-247 859.0 494 85.0
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 5.8e-244 847.4 519 78.2
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 7.5e-244 847.0 518 78.4
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.3e-243 846.3 508 79.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 4.3e-239 831.2 526 75.3
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.6e-238 829.3 524 79.2
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.4e-234 815.5 493 80.5
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 2.3e-232 808.9 566 72.3
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 8.6e-232 807.0 526 73.8
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 4.3e-223 778.1 529 71.3
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.1e-222 775.8 531 71.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.8e-222 775.4 473 82.0
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.4e-221 773.1 494 74.3
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 9.9e-220 766.9 493 73.6
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.9e-219 764.6 520 70.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 8.4e-219 763.8 501 71.3
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.1e-217 759.2 493 72.2
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.8e-213 746.1 520 68.1
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.6e-212 742.3 412 87.6
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 2.4e-210 735.7 502 71.5
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.6e-209 733.0 521 73.3
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.0e-209 731.1 525 72.6
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 3.3e-207 725.3 397 90.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.3e-200 702.6 491 67.0
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.1e-193 679.5 523 68.6
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.0e-192 677.2 379 88.4
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.8e-184 649.8 501 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 4.1e-181 638.6 492 64.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 9.1e-181 637.5 419 79.0
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.5e-178 629.4 346 90.8
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.8e-174 615.1 344 87.8
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 9.4e-154 547.7 355 78.3
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.7e-153 546.2 523 56.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 5.7e-151 538.5 491 52.7
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 4.0e-144 515.8 292 85.3
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.8e-142 509.6 291 83.8
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 8.6e-139 498.0 276 89.5
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.3e-138 496.1 354 73.7
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 2.0e-135 486.9 510 50.6
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 3.4e-127 459.5 502 48.6
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-122 444.5 285 80.4
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 6.2e-89 332.4 196 82.7
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.4e-80 303.9 409 39.9
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.0e-63 247.7 325 45.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.3e-62 245.0 362 42.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 5.3e-40 169.9 93 87.1
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.0e-40 169.5 118 69.5
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.7e-26 123.2 79 72.2
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.3e-22 111.3 91 59.3
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.2e-20 105.5 85 60.0
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 3.0e-14 84.3 125 44.0
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.5e-13 81.3 82 54.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 4.3e-13 80.5 61 62.3
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 8.0e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.1e-08 65.9 35 82.9


User provided reference genes

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