Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.9e-127 459.1 225 100.0
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 4.2e-127 458.0 225 99.6
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 5.7e-124 447.6 225 94.2
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 7.2e-119 430.6 209 96.7
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 2.4e-106 389.0 212 84.9
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 2.1e-65 253.1 215 57.2
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.1e-61 240.7 208 54.3
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 1.2e-60 237.3 211 56.4
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.5e-60 236.9 208 54.3
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.5e-60 236.9 208 54.8
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 3.4e-60 235.7 208 52.9
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 9.9e-60 234.2 207 53.6
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.3e-59 233.8 210 53.8
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 1.3e-59 233.8 207 52.7
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 3.8e-59 232.3 208 54.3
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 8.4e-59 231.1 202 52.5
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 3.2e-58 229.2 202 53.5
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 5.4e-58 228.4 202 55.0
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 2.7e-57 226.1 198 54.5
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 6.0e-57 224.9 207 51.2
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 7.9e-57 224.6 215 50.7
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 1.0e-56 224.2 202 54.5
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.3e-56 223.8 202 51.0
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.3e-56 223.8 211 53.1
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.3e-56 223.8 208 51.9
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 1.7e-56 223.4 207 50.7
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 2.3e-56 223.0 209 51.2
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 3.0e-56 222.6 202 53.0
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 5.1e-56 221.9 204 54.4
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 5.1e-56 221.9 209 50.2
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.1e-56 221.9 206 51.0
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.5e-55 220.3 203 52.2
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.5e-55 220.3 202 53.5
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.5e-55 220.3 200 51.5
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.9e-55 219.9 202 53.0
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.9e-55 219.9 202 53.0
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 4.3e-55 218.8 202 51.5
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 4.3e-55 218.8 198 51.0
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 5.6e-55 218.4 218 49.5
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 1.3e-54 217.2 204 51.5
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 1.3e-54 217.2 215 49.3
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.6e-54 216.9 204 50.5
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 2.1e-54 216.5 202 51.5
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 2.1e-54 216.5 211 50.7
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 2.8e-54 216.1 205 49.3
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 3.6e-54 215.7 207 50.2
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 4.8e-54 215.3 202 49.0
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 6.2e-54 214.9 202 52.5
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 6.2e-54 214.9 205 48.8
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 8.1e-54 214.5 208 50.5
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 8.1e-54 214.5 209 50.2
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 8.1e-54 214.5 203 52.7
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 1.1e-53 214.2 209 51.7
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 1.1e-53 214.2 207 50.2
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 1.8e-53 213.4 208 49.0
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 4.0e-53 212.2 202 50.0
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 9.0e-53 211.1 204 50.5
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 9.0e-53 211.1 208 51.4
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 2.0e-52 209.9 208 49.0
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 2.6e-52 209.5 210 48.6
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 7.6e-52 208.0 207 47.3
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 3.8e-51 205.7 209 49.3
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.8e-51 205.7 201 50.7
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 3.8e-51 205.7 201 50.7
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.8e-51 205.7 200 48.0
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 8.4e-51 204.5 204 48.5
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 8.4e-51 204.5 207 49.3
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.4e-50 203.8 209 49.3
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 9.3e-50 201.1 210 47.1
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 1.6e-49 200.3 214 47.2
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.1e-49 199.9 208 50.0
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 6.0e-49 198.4 223 45.7
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.0e-48 197.6 210 45.7
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 1.3e-48 197.2 200 46.5
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 1.8e-48 196.8 209 48.3
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.8e-48 196.8 211 49.8
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 8.7e-48 194.5 205 46.8
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.9e-47 193.4 207 46.9
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.5e-47 193.0 208 45.7
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.3e-47 192.6 207 47.8
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.6e-47 191.8 204 47.1
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 6.9e-45 184.9 214 43.9
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 5.8e-44 181.8 215 43.3
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 3.8e-43 179.1 206 41.7
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 3.3e-39 166.0 238 39.5
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 4.3e-39 165.6 197 42.1
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 7.4e-39 164.9 215 40.5
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 2.8e-38 162.9 232 39.7
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 8.2e-38 161.4 190 45.8
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 1.8e-37 160.2 215 41.9
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 4.1e-37 159.1 248 37.5
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 1.5e-36 157.1 237 37.6
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 1.0e-35 154.5 205 39.5
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 2.9e-35 152.9 233 37.8
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 3.8e-35 152.5 234 36.8
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 3.8e-35 152.5 209 37.8
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 8.4e-35 151.4 246 37.4
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 1.4e-34 150.6 235 35.7
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 1.9e-34 150.2 239 36.0
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 1.9e-34 150.2 235 35.7
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 1.9e-34 150.2 235 35.7
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 4.2e-34 149.1 235 35.7
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 4.2e-34 149.1 235 35.7
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 4.3e-31 139.0 200 36.5
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 1.3e-30 137.5 211 39.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-28 130.2 200 35.5
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-27 127.5 202 37.1
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 2.9e-27 126.3 132 46.2
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 2.5e-26 123.2 105 55.2
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.2e-25 120.9 139 45.3
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 2.1e-25 120.2 214 34.6
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 1.4e-24 117.5 60 85.0
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 8.8e-24 114.8 121 47.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-23 114.0 202 35.1
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 3.3e-23 112.8 227 30.4
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 4.3e-23 112.5 103 52.4
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.2e-22 110.2 190 35.3
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 3.1e-21 106.3 249 30.9
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 5.9e-20 102.1 120 45.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-19 99.8 225 31.1
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 1.9e-18 97.1 66 66.7
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 2.5e-18 96.7 101 49.5
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.2e-18 96.3 225 30.7
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 7.2e-18 95.1 186 33.3
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 3.0e-16 89.7 143 36.4
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 1.6e-09 67.4 233 26.2


User provided reference genes

Program Settings