Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.9e-264 913.7 470 100.0
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 1.7e-247 859.0 453 98.0
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 7.2e-246 853.6 469 95.5
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 4.0e-244 847.8 468 95.3
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 1.1e-230 803.1 454 92.3
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 1.5e-214 749.6 460 84.6
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 2.0e-203 712.6 462 81.6
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 5.6e-190 667.9 466 75.3
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 3.6e-189 665.2 456 74.8
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.1e-188 663.7 463 75.4
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.4e-188 663.3 459 74.7
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 9.0e-188 660.6 460 75.4
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 7.6e-187 657.5 460 74.1
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 2.9e-186 655.6 456 74.1
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 4.9e-186 654.8 459 74.5
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.4e-185 653.3 459 74.1
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.9e-185 652.9 462 73.2
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.2e-185 652.1 465 74.0
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 4.2e-185 651.7 451 75.6
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 7.1e-185 651.0 455 74.5
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 7.1e-185 651.0 459 74.3
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 7.1e-185 651.0 457 74.2
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 9.3e-185 650.6 459 74.1
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.6e-184 649.8 457 74.6
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 7.8e-184 647.5 457 74.0
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 7.8e-184 647.5 454 73.8
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 1.0e-183 647.1 453 72.6
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 1.3e-183 646.7 453 72.4
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 6.6e-183 644.4 457 73.3
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 8.7e-183 644.0 457 73.3
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 8.7e-183 644.0 457 72.4
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 1.1e-182 643.7 454 72.5
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 7.3e-182 641.0 455 74.1
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 4.8e-181 638.3 454 74.0
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 6.2e-181 637.9 458 72.9
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 2.4e-180 636.0 456 73.7
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 9.0e-180 634.0 459 72.8
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 2.6e-179 632.5 466 71.0
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 7.6e-179 630.9 450 74.2
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.3e-178 630.2 459 70.8
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 4.9e-178 628.2 461 71.1
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 6.4e-178 627.9 463 71.1
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 1.1e-177 627.1 458 71.8
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 1.2e-176 623.6 454 72.7
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 2.7e-176 622.5 466 71.5
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.0e-176 621.3 458 71.6
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 7.9e-176 620.9 461 69.8
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 3.0e-175 619.0 454 70.0
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 1.1e-174 617.1 467 69.4
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 1.9e-174 616.3 458 69.9
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 2.8e-173 612.5 466 69.3
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.8e-173 611.7 451 71.6
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 1.8e-172 609.8 466 68.9
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 3.1e-172 609.0 462 69.5
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 5.3e-172 608.2 452 71.7
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 6.9e-172 607.8 453 69.5
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.0e-171 606.3 452 71.5
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 5.8e-171 604.7 458 69.2
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 5.8e-171 604.7 461 69.2
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 1.7e-170 603.2 458 68.1
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 2.9e-170 602.4 461 69.6
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.9e-170 601.7 452 70.8
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 4.2e-169 598.6 486 66.0
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.6e-168 596.7 461 67.2
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.3e-167 593.6 455 68.6
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 1.1e-166 590.5 466 68.0
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 2.5e-166 589.3 457 67.4
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 2.5e-166 589.3 457 67.4
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 7.4e-166 587.8 457 67.2
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 8.2e-165 584.3 472 66.1
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 5.8e-163 578.2 454 67.0
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 7.6e-163 577.8 454 67.0
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 6.0e-160 568.2 473 64.9
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 7.9e-160 567.8 460 65.2
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 3.0e-159 565.8 360 81.4
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 3.9e-159 565.5 494 62.8
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.9e-158 563.1 460 66.3
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 2.5e-158 562.8 453 64.0
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 5.7e-158 561.6 454 66.3
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 5.7e-158 561.6 455 64.2
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.6e-157 560.1 458 65.3
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 6.3e-157 558.1 521 59.7
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 1.4e-156 557.0 454 65.2
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.1e-156 555.8 401 74.3
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 3.1e-156 555.8 453 66.0
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 1.2e-155 553.9 462 66.7
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 2.0e-155 553.1 460 63.7
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.7e-154 550.1 456 64.0
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.2e-154 549.7 454 65.0
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.9e-154 549.3 397 71.8
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 8.5e-154 547.7 460 64.3
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 4.2e-153 545.4 359 78.6
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.6e-152 543.5 460 64.6
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.1e-152 543.1 457 62.1
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 1.4e-151 540.4 460 63.3
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 3.9e-151 538.9 460 63.0
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 5.7e-150 535.0 578 54.7
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.2e-149 533.1 459 63.6
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 3.7e-149 532.3 465 60.9
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 3.2e-145 519.2 388 70.1
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.8e-143 513.5 354 77.4
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 1.1e-142 510.8 467 59.3
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 2.6e-142 509.6 441 63.3
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 3.9e-135 485.7 359 69.6
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.8e-127 460.3 460 56.5
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.5e-126 457.2 428 61.0
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 1.4e-124 450.7 318 76.7
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.6e-123 447.2 357 69.5
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 3.4e-118 429.5 473 50.5
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 5.5e-113 412.1 472 49.8
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.5e-110 404.1 290 72.1
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 9.8e-110 401.4 293 75.4
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.3e-109 401.0 494 49.0
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 7.3e-105 385.2 397 52.1
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.4e-86 322.8 349 53.0
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 6.6e-66 255.8 194 70.1
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.5e-65 254.6 231 63.6
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 3.4e-62 243.4 140 87.1
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 7.9e-59 232.3 343 42.9
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 6.7e-58 229.2 470 33.8
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 1.9e-57 227.6 287 52.6
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 1.6e-51 208.0 136 78.7
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 2.3e-50 204.1 500 30.6
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 2.5e-49 200.7 297 48.5
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.5e-49 200.7 162 59.3
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.3e-48 198.4 143 69.9
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 6.2e-48 196.1 193 48.7
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 6.9e-47 192.6 536 29.1
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.9e-44 184.5 170 62.4
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.1e-42 176.4 159 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 6.3e-40 169.5 148 56.8
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.0e-38 164.5 124 65.3
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 5.5e-36 156.4 293 37.9
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.2e-35 155.2 116 70.7
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 1.0e-26 125.6 537 24.6
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 8.8e-26 122.5 80 76.2
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 3.3e-25 120.6 289 37.4
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.3e-24 118.6 98 54.1
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.9e-22 109.8 66 78.8
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.0e-18 97.4 75 64.0
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 1.1e-17 95.5 106 49.1
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 4.1e-15 87.0 463 23.1
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.0e-10 70.5 121 38.8
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 9.8e-09 65.9 84 42.9
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 9.8e-09 65.9 185 28.6
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 3.5e-06 57.4 37 70.3


User provided reference genes

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