Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 3711.8 2005 100.0
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 3481.4 2022 94.2
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 0.0e+00 3405.2 2036 91.7
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 3392.1 2033 91.4
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 0.0e+00 2785.0 1976 79.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 2489.5 1394 95.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 0.0e+00 1869.7 2133 58.7
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 0.0e+00 1686.0 2121 55.0
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 3.8e-304 1049.3 2109 42.6
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 5.5e-303 1045.4 2000 41.9
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 8.8e-301 1038.1 2060 42.9
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 8.8e-293 1011.5 2091 41.8
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 4.6e-257 892.9 1934 40.2
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.4e-242 844.0 2157 37.8
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 2.5e-239 833.9 2072 38.4
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 5.8e-236 822.8 1944 39.4
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.1e-233 814.3 2047 37.5
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.4e-229 801.6 2068 38.0
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.1e-226 792.0 1782 39.6
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.1e-221 773.9 2074 36.4
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 5.5e-218 763.1 2116 36.5
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 4.6e-217 760.0 1930 36.9
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.5e-212 745.0 1889 37.6
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 9.7e-207 725.7 2138 35.9
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 6.5e-203 713.0 2009 36.2
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 2.1e-201 708.0 2084 35.2
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 3.7e-198 697.2 1232 44.7
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 4.1e-197 693.7 1997 36.2
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 9.1e-197 692.6 2082 35.0
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 2.2e-195 688.0 1890 35.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 3.8e-195 687.2 2041 34.8
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.1e-194 685.6 2255 33.2
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 1.3e-190 672.2 1896 35.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 4.5e-188 663.7 1950 34.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 5.9e-188 663.3 2004 35.4
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 3.2e-186 657.5 1908 35.3
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.0e-184 652.5 2123 33.6
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.5e-183 648.7 2130 33.9
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 5.7e-183 646.7 783 56.6
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 7.5e-183 646.4 795 56.0
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.1e-177 628.2 1852 34.4
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 7.5e-175 619.8 1936 35.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 4.1e-173 614.0 2187 34.2
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 4.1e-173 614.0 2084 33.8
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.8e-169 601.3 1924 34.9
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.4e-168 599.0 2033 32.5
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.5e-167 595.5 784 53.4
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.0e-167 595.1 2066 33.7
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.4e-165 588.2 2088 33.6
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 2.0e-164 585.1 970 47.0
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 8.0e-161 573.2 1267 41.1
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.0e-160 572.8 726 53.3
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 2.0e-156 558.5 2094 32.9
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 5.2e-152 543.9 1271 38.7
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.2e-145 522.7 951 42.6
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 5.2e-144 517.3 2025 32.0
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.0e-143 515.4 992 43.2
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 4.9e-142 510.8 1802 32.4
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 6.4e-142 510.4 829 47.2
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.1e-140 505.4 1988 31.6
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 1.5e-138 499.2 910 43.0
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 7.3e-138 496.9 918 43.5
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 9.5e-138 496.5 2066 31.1
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.8e-137 495.0 1966 32.6
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 2.6e-135 488.4 791 46.3
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.7e-134 485.7 787 45.9
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 6.4e-134 483.8 911 44.1
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.1e-133 481.1 925 41.9
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 5.4e-133 480.7 1904 31.9
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 2.1e-132 478.8 792 47.5
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 6.6e-131 473.8 905 43.4
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 8.6e-131 473.4 2089 30.4
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.2e-129 469.5 913 42.7
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 5.2e-128 464.2 1723 30.6
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 2.0e-127 462.2 834 44.8
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 9.9e-127 459.9 858 43.4
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.7e-126 459.1 2120 27.7
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.9e-126 458.4 687 47.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 2.9e-126 458.4 475 64.0
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.4e-125 456.1 767 44.7
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 7.8e-124 450.3 768 44.0
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 1.5e-122 446.0 2032 30.1
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 5.6e-122 444.1 2032 30.0
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.8e-120 439.1 659 44.0
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.8e-120 439.1 766 43.1
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.8e-120 439.1 766 43.1
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 2.4e-120 438.7 902 36.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 4.0e-120 438.0 2044 29.9
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.0e-119 435.6 760 42.0
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 3.4e-119 434.9 844 43.0
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 4.5e-119 434.5 904 40.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.6e-116 426.0 777 44.0
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.7e-116 425.2 815 43.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 3.5e-116 424.9 2140 29.8
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 4.6e-116 424.5 819 44.2
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 7.9e-116 423.7 989 38.7
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 7.4e-114 417.2 657 42.8
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 3.4e-111 408.3 782 43.7
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.5e-106 392.1 487 56.3
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 4.3e-106 391.3 729 44.2
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 3.1e-104 385.2 638 42.6
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.6e-103 382.1 785 42.0
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.1e-98 366.7 787 41.0
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.4e-96 359.8 906 37.7
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.4e-96 359.0 796 39.1
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 7.9e-92 344.0 499 46.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.4e-83 316.6 802 37.5
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.3e-82 312.0 884 35.7
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 7.4e-74 284.3 330 58.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.2e-73 282.7 698 34.0
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 2.2e-73 282.7 704 38.1
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 6.7e-67 261.2 261 54.4
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 5.4e-56 224.9 276 59.8
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.6e-52 212.2 1499 26.1
MD08G1160200 Malus domestica HOM05D000237 ORTHO05D006530 4.7e-52 211.8 296 47.6
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 3.1e-48 199.1 611 35.5
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 8.6e-46 191.0 225 46.2
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 3.6e-44 185.7 221 48.4
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.0e-43 182.2 505 33.7
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.9e-40 173.3 921 24.3
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.2e-39 170.6 1602 24.6
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 6.0e-39 168.3 129 66.7
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-35 157.1 637 28.9
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 8.9e-35 154.5 105 73.3
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.7e-31 142.9 1573 23.6
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 7.8e-31 141.4 203 58.6
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.6e-28 133.7 416 29.8
MD08G1160100 Malus domestica HOM05D000237 ORTHO05D006530 7.5e-26 124.8 147 50.3
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 4.9e-25 122.1 747 28.8
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 2.1e-23 116.7 247 35.6
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 2.8e-20 106.3 133 44.4
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.3e-17 97.4 76 73.7
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 5.4e-16 92.0 139 43.9
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 3.5e-15 89.4 98 52.0
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.0e-14 87.8 131 44.3
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-11 77.8 696 26.6
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.4e-08 67.4 372 26.6
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.1e-07 63.5 144 33.3


User provided reference genes

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