Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 5.2e-196 687.6 355 100.0
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 5.2e-172 607.8 318 99.1
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 9.2e-161 570.5 318 94.0
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.9e-159 565.1 318 93.1
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 1.3e-154 550.1 318 91.2
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.3e-154 550.1 318 91.2
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 8.7e-143 510.8 320 85.3
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 7.4e-102 374.8 328 66.2
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 1.7e-93 347.1 328 63.1
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 2.2e-93 346.7 335 60.3
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 8.2e-93 344.7 335 60.0
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 1.3e-90 337.4 331 60.4
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 3.8e-90 335.9 326 60.7
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 1.9e-89 333.6 330 61.2
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 1.1e-86 324.3 327 59.0
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 5.7e-86 322.0 327 58.7
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 1.3e-85 320.9 336 57.4
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 4.1e-84 315.8 338 56.5
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 3.5e-83 312.8 338 55.6
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 5.0e-82 308.9 343 54.5
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 1.1e-81 307.8 341 55.7
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 1.1e-81 307.8 328 57.3
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 2.5e-81 306.6 326 56.1
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 9.4e-81 304.7 327 58.1
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 1.2e-80 304.3 331 55.6
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 2.7e-80 303.1 341 55.1
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 2.3e-79 300.1 344 53.5
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 4.0e-79 299.3 328 56.4
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 4.0e-79 299.3 343 55.4
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 1.5e-78 297.4 331 55.0
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 4.4e-78 295.8 341 54.8
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 1.7e-77 293.9 326 54.6
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 2.8e-77 293.1 329 55.3
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 3.7e-77 292.7 326 54.9
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 3.7e-77 292.7 330 55.8
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 8.3e-77 291.6 332 56.0
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 3.1e-76 289.7 333 54.1
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 7.0e-76 288.5 334 53.6
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 1.2e-75 287.7 376 50.0
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 4.5e-75 285.8 336 53.3
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 5.9e-75 285.4 326 56.4
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 7.7e-75 285.0 347 53.6
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 7.7e-75 285.0 327 53.2
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 1.7e-74 283.9 336 53.0
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 6.5e-74 282.0 326 53.1
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 1.1e-73 281.2 328 52.4
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 2.5e-73 280.0 343 51.9
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 2.5e-73 280.0 331 53.5
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 4.2e-73 279.3 331 52.3
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 5.5e-73 278.9 326 51.8
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.2e-72 277.7 336 52.7
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 1.6e-72 277.3 320 51.9
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 2.1e-72 276.9 329 53.2
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 8.0e-72 275.0 336 51.5
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 1.4e-71 274.2 330 52.7
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.3e-71 273.5 328 52.1
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 2.3e-71 273.5 327 52.3
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 4.0e-71 272.7 320 52.2
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 4.0e-71 272.7 324 51.5
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 6.8e-71 271.9 342 52.0
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 6.8e-71 271.9 337 51.9
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 6.8e-71 271.9 337 51.9
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 6.8e-71 271.9 327 51.4
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 1.5e-70 270.8 325 52.0
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 2.6e-70 270.0 337 51.0
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 3.7e-69 266.2 320 51.9
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 4.8e-69 265.8 337 51.3
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 3.1e-68 263.1 312 50.0
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 4.1e-68 262.7 320 52.2
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 9.1e-68 261.5 319 50.2
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 1.2e-67 261.2 321 52.3
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 1.6e-67 260.8 319 50.5
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 1.6e-67 260.8 334 50.0
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 2.0e-67 260.4 323 50.8
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 2.7e-67 260.0 320 50.6
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 3.5e-67 259.6 319 50.5
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 5.9e-67 258.8 318 50.0
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 5.9e-67 258.8 318 50.0
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 8.6e-66 255.0 321 51.4
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 8.6e-66 255.0 320 50.0
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 3.6e-64 249.6 321 50.5
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 1.0e-63 248.1 342 49.1
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 1.4e-63 247.7 334 48.8
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 3.0e-63 246.5 344 45.6
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.5e-62 244.2 339 49.0
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 2.0e-62 243.8 326 49.7
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 2.6e-62 243.4 337 47.5
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 1.3e-61 241.1 329 45.3
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 1.1e-60 238.0 309 52.4
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.4e-60 236.9 327 50.2
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 7.0e-60 235.3 345 46.7
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 9.2e-60 235.0 319 45.8
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 1.3e-58 231.1 330 45.5
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 1.1e-57 228.0 342 46.2
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 1.5e-57 227.6 322 46.0
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 1.6e-56 224.2 407 41.3
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 3.1e-55 219.9 160 68.1
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 3.1e-55 219.9 337 43.9
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 3.7e-53 213.0 285 47.7
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 4.9e-53 212.6 335 43.9
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 6.4e-53 212.2 333 44.1
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 2.2e-45 187.2 326 39.6
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 2.3e-42 177.2 333 39.3
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 3.1e-39 166.8 190 48.9
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.9e-36 157.5 321 36.1
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 9.2e-36 155.2 319 34.8
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 1.3e-34 151.4 264 39.0
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 3.1e-31 140.2 162 46.3
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 9.9e-30 135.2 346 33.5
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 9.3e-28 128.6 340 32.9
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 2.1e-27 127.5 342 31.0
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 1.9e-25 120.9 143 44.1
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 9.6e-25 118.6 323 35.6
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 1.1e-23 115.2 340 30.9
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 9.0e-23 112.1 163 38.7
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 1.7e-21 107.8 266 39.8
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 3.2e-20 103.6 207 34.3
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 1.1e-17 95.1 60 61.7
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 5.6e-17 92.8 60 60.0
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 1.4e-15 88.2 166 40.4
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.0e-14 84.3 186 38.7
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.6e-14 84.0 222 36.9
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.1e-12 78.6 222 36.0
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 1.0e-05 55.5 54 57.4


User provided reference genes

Program Settings