Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.5e-217 759.2 373 100.0
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.6e-202 707.2 372 94.9
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.8e-200 701.8 359 96.1
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 3.8e-197 691.4 359 95.0
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.0e-195 684.1 353 95.8
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.9e-189 664.5 388 88.1
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 6.4e-181 637.5 362 86.7
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 8.8e-154 547.4 364 76.1
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 4.5e-142 508.4 373 67.8
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 3.2e-140 502.3 366 68.0
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 2.7e-139 499.2 372 67.5
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 3.6e-139 498.8 360 69.2
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 4.7e-139 498.4 369 66.1
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 8.0e-139 497.7 372 67.7
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 6.7e-138 494.6 366 68.0
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 1.3e-136 490.3 338 70.1
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.7e-136 490.0 365 66.6
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 1.7e-136 490.0 364 66.5
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 2.2e-136 489.6 373 66.5
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 4.8e-136 488.4 373 66.2
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 8.2e-136 487.6 363 67.2
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 8.2e-136 487.6 361 67.0
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.1e-135 487.3 339 67.3
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.4e-135 486.1 338 68.3
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.4e-135 486.1 318 72.0
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 3.1e-135 485.7 364 67.3
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 7.0e-135 484.6 317 73.8
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 4.5e-134 481.9 361 65.9
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 5.0e-133 478.4 370 64.9
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 8.5e-133 477.6 364 64.3
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 2.5e-132 476.1 368 66.3
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 4.2e-132 475.3 369 63.1
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.6e-131 473.4 362 63.5
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.6e-131 473.4 362 63.5
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 2.7e-131 472.6 336 68.8
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 8.0e-131 471.1 368 64.9
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 8.8e-130 467.6 329 68.4
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.2e-129 467.2 333 68.8
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 1.5e-129 466.8 363 65.8
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.7e-128 463.4 366 63.7
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 3.7e-128 462.2 330 67.3
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 8.3e-128 461.1 330 67.0
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.3e-125 453.0 358 62.0
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 2.9e-125 452.6 380 61.3
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.9e-125 452.6 367 61.9
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 6.5e-125 451.4 364 61.5
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 6.5e-125 451.4 398 58.5
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.9e-124 449.9 325 67.7
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 5.5e-124 448.4 324 67.9
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 1.2e-123 447.2 329 66.3
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 1.8e-122 443.4 367 61.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.3e-122 443.0 354 63.8
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 8.9e-122 441.0 329 65.7
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.2e-121 440.7 438 54.8
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.0e-121 439.9 333 66.7
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 2.0e-121 439.9 352 63.4
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.6e-121 439.5 354 63.6
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.6e-121 439.5 358 61.7
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 4.4e-121 438.7 329 65.3
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.3e-120 437.2 342 63.7
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.7e-120 436.8 380 59.2
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.2e-120 436.4 362 62.2
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 2.8e-120 436.0 332 64.2
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 4.9e-120 435.3 379 59.6
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 6.3e-120 434.9 364 61.8
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.4e-119 433.7 370 61.1
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 3.1e-119 432.6 366 61.7
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 3.1e-119 432.6 330 63.0
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 7.0e-119 431.4 367 61.6
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.0e-118 429.9 351 62.1
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 2.7e-118 429.5 370 59.5
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.7e-117 426.8 329 63.2
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 1.7e-117 426.8 344 61.6
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 2.3e-117 426.4 337 62.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 3.8e-117 425.6 319 63.9
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 5.0e-117 425.2 349 61.3
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 7.3e-116 421.4 308 67.2
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.0e-114 417.5 337 61.1
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.0e-114 417.5 321 63.9
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 1.8e-114 416.8 374 58.8
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 3.0e-114 416.0 386 59.3
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 3.0e-114 416.0 280 71.4
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 6.8e-114 414.8 320 63.8
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 6.8e-114 414.8 323 61.0
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 1.7e-112 410.2 362 58.8
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 3.7e-112 409.1 342 62.3
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 2.7e-110 402.9 300 67.3
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 3.5e-110 402.5 346 57.8
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 1.0e-109 401.0 346 59.5
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 3.0e-109 399.4 313 61.0
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.9e-109 399.1 313 61.0
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 6.6e-109 398.3 330 60.9
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 8.6e-109 397.9 346 61.6
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.5e-108 397.1 279 69.5
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 7.3e-108 394.8 279 67.7
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 1.8e-106 390.2 274 69.3
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 8.9e-106 387.9 349 58.7
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 1.9e-103 380.2 374 55.3
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 2.4e-103 379.8 372 56.2
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 2.0e-102 376.7 353 57.2
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 3.0e-101 372.9 307 61.6
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.1e-100 370.9 379 54.9
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 1.4e-95 354.0 255 72.5
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 8.6e-93 344.7 332 56.6
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.1e-92 344.4 323 57.0
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 5.2e-90 335.5 299 56.5
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 6.4e-88 328.6 305 53.4
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 6.6e-85 318.5 345 49.0
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 2.1e-83 313.5 332 50.6
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 6.9e-82 308.5 286 53.5
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 2.1e-78 297.0 364 47.5
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 9.9e-73 278.1 296 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 1.1e-68 264.6 214 60.7
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 5.6e-68 262.3 252 55.2
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.3e-61 240.4 265 50.2
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 3.3e-60 236.5 284 45.8
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 5.6e-60 235.7 294 42.5
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.6e-59 234.2 283 40.6
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 1.4e-55 221.1 293 42.3
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 4.5e-49 199.5 129 72.9
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 2.7e-38 163.7 146 55.5
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 6.5e-32 142.5 89 73.0
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 3.6e-30 136.7 85 75.3
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 3.9e-29 133.3 199 38.2
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.6e-20 104.0 69 60.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 1.4e-10 71.6 42 69.0
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.6e-09 68.2 69 53.6
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 1.1e-07 62.0 101 39.6
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 4.7e-06 56.6 69 42.0


User provided reference genes

Program Settings