Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0932 Fragaria x ananassa HOM05D007651 ORTHO05D001192 1.6e-84 316.2 180 100.0
FAN19G0598 Fragaria x ananassa HOM05D000390 ORTHO05D001192 2.2e-65 252.7 139 89.2
RcHm_v2.0_Chr6g0253921 Rosa chinensis HOM05D000390 ORTHO05D001192 1.1e-40 170.6 140 64.3
RcHm_v2.0_Chr2g0111691 Rosa chinensis HOM05D000390 ORTHO05D001192 7.0e-40 167.9 144 63.9
FAN27G0122 Fragaria x ananassa HOM05D000390 ORTHO05D001192 3.0e-35 152.5 140 61.4
FvH4_2g04471 Fragaria vesca HOM05D000390 ORTHO05D001192 2.6e-34 149.4 141 61.7
FAN24G0796 Fragaria x ananassa HOM05D000390 ORTHO05D001192 2.6e-34 149.4 141 61.7
FAN20G1844 Fragaria x ananassa HOM05D000390 ORTHO05D001192 4.1e-32 142.1 143 58.7
FAN15G3009 Fragaria x ananassa HOM05D000390 ORTHO05D001192 7.7e-31 137.9 132 60.6
RcHm_v2.0_Chr6g0253841 Rosa chinensis HOM05D000390 ORTHO05D001192 1.8e-24 116.7 138 50.0
RcHm_v2.0_Chr3g0493571 Rosa chinensis HOM05D000390 ORTHO05D001192 1.2e-23 114.0 138 47.8
Prupe.3G152000 Prunus persica HOM05D000390 ORTHO05D001192 2.3e-22 109.8 139 46.0
FvH4_2g04470 Fragaria vesca HOM05D000390 ORTHO05D001192 6.6e-22 108.2 137 43.1
Prupe.8G145500 Prunus persica HOM05D000390 ORTHO05D001192 6.6e-22 108.2 143 40.6
FvH4_1g29100 Fragaria vesca HOM05D000390 ORTHO05D001192 9.5e-21 104.4 138 44.2
FAN23G1779 Fragaria x ananassa HOM05D000390 ORTHO05D001192 2.1e-20 103.2 137 44.5
FAN26G2380 Fragaria x ananassa HOM05D000390 ORTHO05D001192 2.1e-20 103.2 137 44.5
Potri.004G091900 Populus trichocarpa HOM05D000390 ORTHO05D001192 6.1e-20 101.7 134 42.5
MD10G1106400 Malus domestica HOM05D000390 ORTHO05D001192 8.9e-19 97.8 135 37.8
RcHm_v2.0_Chr6g0252861 Rosa chinensis HOM05D000390 ORTHO05D001192 3.4e-18 95.9 141 40.4
MD09G1260200 Malus domestica HOM05D000390 ORTHO05D001192 4.4e-18 95.5 142 40.8
CiPaw.03G067600 Carya illinoinensis HOM05D000390 ORTHO05D001192 2.9e-17 92.8 136 42.6
FAN28G1554 Fragaria x ananassa HOM05D007651 ORTHO05D001192 2.9e-17 92.8 55 83.6
Lj4g0018276 Lotus japonicus HOM05D000390 ORTHO05D001192 4.9e-17 92.0 134 35.8
Haze_14210 Corylus avellana HOM05D000390 ORTHO05D001192 8.3e-17 91.3 139 41.7
Actinidia15920 Actinidia chinensis HOM05D000390 ORTHO05D001192 2.4e-16 89.7 135 37.8
Actinidia17652 Actinidia chinensis HOM05D000390 ORTHO05D001192 3.2e-16 89.4 134 37.3
Actinidia36360 Actinidia chinensis HOM05D000390 ORTHO05D001192 3.2e-16 89.4 135 36.3
Glyma.08G079600 Glycine max HOM05D000390 ORTHO05D001192 5.4e-16 88.6 136 37.5
vmacro18054 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 7.0e-16 88.2 132 37.9
RcHm_v2.0_Chr6g0252871 Rosa chinensis HOM05D000390 ORTHO05D001192 2.0e-15 86.7 143 39.9
arahy.Tifrunner.gnm1.ann1.LDP0G3 Arachis hypogaea HOM05D000390 ORTHO05D001192 3.5e-15 85.9 141 34.8
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 5.9e-15 85.1 140 35.7
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 5.9e-15 85.1 140 35.7
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 5.9e-15 85.1 136 39.0
Glyma.05G124500 Glycine max HOM05D000390 ORTHO05D001192 5.9e-15 85.1 136 36.0
FvH4_2g03850 Fragaria vesca HOM05D000390 ORTHO05D001192 7.8e-15 84.7 124 42.7
Gorai.010G218300 Gossypium raimondii HOM05D007651 ORTHO05D000898 7.8e-15 84.7 140 37.9
Prupe.3G152100 Prunus persica HOM05D007651 ORTHO05D001192 7.8e-15 84.7 139 39.6
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 1.0e-14 84.3 140 38.6
Potri.004G072800 Populus trichocarpa HOM05D000390 ORTHO05D001192 1.0e-14 84.3 139 38.1
Thecc.04G123400 Theobroma cacao HOM05D000390 ORTHO05D001192 1.0e-14 84.3 143 38.5
Potri.004G091800 Populus trichocarpa HOM05D007651 ORTHO05D000898 1.3e-14 84.0 140 40.0
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 3.0e-14 82.8 141 39.0
Prupe.8G145400 Prunus persica HOM05D000390 ORTHO05D001192 3.0e-14 82.8 121 40.5
TAR629G0648 Trochodendron aralioides HOM05D000390 ORTHO05D001192 3.9e-14 82.4 134 38.8
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 5.0e-14 82.0 140 38.6
Thecc.10G176700 Theobroma cacao HOM05D007651 ORTHO05D001192 5.0e-14 82.0 140 36.4
arahy.Tifrunner.gnm1.ann1.V5N9VT Arachis hypogaea HOM05D000390 ORTHO05D001192 6.6e-14 81.6 138 34.8
Duzib138G1453 Durio zibethinus HOM05D000390 ORTHO05D001192 1.1e-13 80.9 130 40.0
PSO478G2442 Papaver somniferum HOM05D000390 ORTHO05D001192 1.1e-13 80.9 139 36.0
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 1.1e-13 80.9 136 39.0
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 1.5e-13 80.5 134 32.8
Rhsim08G0084700 Rhododendron simsii HOM05D000390 ORTHO05D001192 1.5e-13 80.5 136 36.0
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 1.5e-13 80.5 140 38.6
CSS0004503 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D001192 1.9e-13 80.1 135 36.3
CSS0029078 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D001192 1.9e-13 80.1 139 38.1
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 1.9e-13 80.1 143 38.5
PSO017G0644 Papaver somniferum HOM05D000390 ORTHO05D001192 1.9e-13 80.1 139 36.0
Potri.017G148100 Populus trichocarpa HOM05D000390 ORTHO05D001192 1.9e-13 80.1 140 39.3
CANSAT01G2817 Cannabis sativa HOM05D007651 ORTHO05D001192 3.3e-13 79.3 139 37.4
Manes.02G074100 Manihot esculenta HOM05D000390 ORTHO05D001192 3.3e-13 79.3 143 39.2
Rhsim08G0085400 Rhododendron simsii HOM05D000390 ORTHO05D001192 3.3e-13 79.3 135 35.6
Gohir.A11G161500 Gossypium hirsutum HOM05D000390 ORTHO05D001192 4.3e-13 79.0 123 43.9
Hma1.2p1_1820F.1_g304200 Hydrangea macrophylla HOM05D007651 ORTHO05D001192 4.3e-13 79.0 140 37.9
COL.COLO4_27120 Corchorus olitorius HOM05D000390 ORTHO05D001192 5.6e-13 78.6 142 34.5
Dinv19002 Davidia involucrata HOM05D000390 ORTHO05D001192 5.6e-13 78.6 135 37.0
Rhsim08G0085200 Rhododendron simsii HOM05D000390 ORTHO05D001192 5.6e-13 78.6 135 34.1
Phvul.002G201000 Phaseolus vulgaris HOM05D000390 ORTHO05D001192 7.3e-13 78.2 136 34.6
VMungo0251G2516 Vigna mungo HOM05D000390 ORTHO05D001192 7.3e-13 78.2 136 35.3
Gorai.007G178800 Gossypium raimondii HOM05D000390 ORTHO05D001192 9.5e-13 77.8 136 39.7
ClCG03G008740 Citrullus lanatus HOM05D000390 ORTHO05D001192 1.2e-12 77.4 142 35.9
Gohir.D11G167700 Gossypium hirsutum HOM05D000390 ORTHO05D001192 1.6e-12 77.0 136 39.7
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 1.6e-12 77.0 140 36.4
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 2.1e-12 76.6 136 36.0
Ca_18302_v3 Cicer arietinum L. HOM05D000390 ORTHO05D001192 2.8e-12 76.3 134 32.1
Psat7g094040 Pisum sativum HOM05D000390 ORTHO05D001192 2.8e-12 76.3 135 34.1
arahy.Tifrunner.gnm1.ann1.R8LD9K Arachis hypogaea HOM05D000390 ORTHO05D001192 3.6e-12 75.9 137 32.1
Migut.L00474 Erythranthe guttata HOM05D007651 ORTHO05D001192 3.6e-12 75.9 134 33.6
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 3.6e-12 75.9 140 35.0
FAN15G2481 Fragaria x ananassa HOM05D007651 ORTHO05D001192 4.7e-12 75.5 123 38.2
Sabra17G0123800 Salix brachista HOM05D000390 ORTHO05D001192 4.7e-12 75.5 140 36.4
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 6.2e-12 75.1 134 36.6
vmacro18059 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 1.1e-11 74.3 132 33.3
MELO3C022842.2 Cucumis melo HOM05D000390 ORTHO05D001192 1.4e-11 73.9 137 36.5
Rhsim10G0078700 Rhododendron simsii HOM05D000390 ORTHO05D001192 1.4e-11 73.9 139 33.8
SGA_v2.0_scaffold174G39280 Striga asiatica HOM05D007651 ORTHO05D000898 1.8e-11 73.6 134 32.1
Lsat_1_v5_gn_4_155061 Lactuca sativa HOM05D007651 ORTHO05D000898 2.3e-11 73.2 138 32.6
Medtr4g094468 Medicago truncatula HOM05D000390 ORTHO05D001192 2.3e-11 73.2 135 32.6
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 2.3e-11 73.2 137 32.8
Cfa005787 Carpinus fangiana HOM05D000390 ORTHO05D001192 4.0e-11 72.4 139 38.1
HanXRQChr11g0325241 Helianthus annuus HOM05D007651 ORTHO05D000898 4.0e-11 72.4 138 34.8
CSS0004053 Camellia sinensis var. sinensis HOM05D007651 ORTHO05D001192 5.2e-11 72.0 134 34.3
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 6.8e-11 71.6 136 32.4
HanXRQChr09g0262351 Helianthus annuus HOM05D007651 ORTHO05D000898 6.8e-11 71.6 138 33.3
Lalb_Chr12g0208721 Lupinus albus HOM05D000390 ORTHO05D001192 6.8e-11 71.6 133 34.6
MBI10_g07288_MAGBIO Magnolia biondii HOM05D000390 ORTHO05D001192 1.2e-10 70.9 136 36.0
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 2.6e-10 69.7 136 32.4
vmacro05500 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 2.6e-10 69.7 134 34.3
SHI30134 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-10 68.9 136 35.3
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 5.8e-10 68.6 140 31.4
Aqoxy1G01616 Aquilegia oxysepala HOM05D000390 ORTHO05D001192 9.8e-10 67.8 138 31.9
arahy.Tifrunner.gnm1.ann1.Y6I14R Arachis hypogaea HOM05D000390 ORTHO05D001192 1.3e-09 67.4 130 32.3
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.3e-09 67.4 135 33.3
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 1.3e-09 67.4 136 31.6
Aqoxy5G04125 Aquilegia oxysepala HOM05D000390 ORTHO05D001192 2.2e-09 66.6 138 31.9
DCAR_025881 Daucus carota HOM05D000390 ORTHO05D001192 2.9e-09 66.2 140 32.1
vmacro05497 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 2.9e-09 66.2 118 36.4
Sed0008308 Sechium edule HOM05D000390 ORTHO05D001192 3.7e-09 65.9 137 34.3
Hma1.2p1_0283F.1_g113590 Hydrangea macrophylla HOM05D000390 ORTHO05D001192 4.9e-09 65.5 135 31.9
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 8.3e-09 64.7 130 33.8
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 1.9e-08 63.5 123 33.3
TPR.G5324 Trifolium pratense HOM05D000218 ORTHO05D001192 1.9e-08 63.5 118 35.6
Medtr1g046650 Medicago truncatula HOM05D000218 ORTHO05D001192 2.4e-08 63.2 135 31.9
Medtr5g061290 Medicago truncatula HOM05D000390 ORTHO05D001192 2.4e-08 63.2 121 36.4
Rhsim08G0085300 Rhododendron simsii HOM05D000390 ORTHO05D001192 2.4e-08 63.2 135 34.1
DCAR_010733 Daucus carota HOM05D000390 ORTHO05D001192 3.2e-08 62.8 121 34.7
ECA238G0783 Erigeron canadensis HOM05D007651 ORTHO05D000898 4.1e-08 62.4 127 29.9
TPR.G5310 Trifolium pratense HOM05D000390 ORTHO05D001192 4.1e-08 62.4 118 33.9
TPR.G5316 Trifolium pratense HOM05D000218 ORTHO05D001192 4.1e-08 62.4 128 30.5
Actinidia17653 Actinidia chinensis HOM05D007651 ORTHO05D000898 5.4e-08 62.0 130 31.5
Cc07_g08260 Coffea canephora HOM05D000390 ORTHO05D001192 5.4e-08 62.0 138 31.2
FAN28G0945 Fragaria x ananassa HOM05D000390 ORTHO05D001192 5.4e-08 62.0 36 80.6
Medtr5g076660 Medicago truncatula HOM05D000390 ORTHO05D001192 5.4e-08 62.0 124 34.7
SGA_v2.0_scaffold329G48863 Striga asiatica HOM05D000390 ORTHO05D001192 9.2e-08 61.2 133 30.8
TPR.G1932 Trifolium pratense HOM05D000218 ORTHO05D001192 9.2e-08 61.2 123 33.3
Hma1.2p1_1008F.1_g247220 Hydrangea macrophylla HOM05D000390 ORTHO05D001192 1.2e-07 60.8 119 31.9
Hma1.2p1_2411F.1_g321570 Hydrangea macrophylla HOM05D000390 ORTHO05D001192 1.2e-07 60.8 122 31.1
PGR042G2064 Punica granatum HOM05D000390 ORTHO05D001192 1.2e-07 60.8 123 36.6
Atru.chr1.1773 Acer truncatum HOM05D000390 ORTHO05D001192 2.0e-07 60.1 135 30.4
Cpa.g.sc116.13 Carica papaya HOM05D000390 ORTHO05D001192 2.0e-07 60.1 138 31.9
Medtr1g046640 Medicago truncatula HOM05D000218 ORTHO05D001192 2.7e-07 59.7 133 33.1
TPR.G5303 Trifolium pratense HOM05D000390 ORTHO05D001192 2.7e-07 59.7 118 36.4
Gohir.D06G186000 Gossypium hirsutum HOM05D007651 ORTHO05D000898 3.5e-07 59.3 81 38.3
Sp7g05350 Schrenkiella parvula HOM05D000390 ORTHO05D001192 4.6e-07 58.9 131 32.1
Gohir.A06G176700 Gossypium hirsutum HOM05D007651 ORTHO05D000898 6.0e-07 58.5 81 38.3
Oeu000897.1 Olea europaea HOM05D000390 ORTHO05D001192 6.0e-07 58.5 132 30.3
Medtr5g076370 Medicago truncatula HOM05D000218 ORTHO05D001192 1.0e-06 57.8 123 32.5
Psat2g042640 Pisum sativum HOM05D000390 ORTHO05D001192 1.0e-06 57.8 137 29.9
Psat2g042720 Pisum sativum HOM05D000390 ORTHO05D001192 1.3e-06 57.4 127 30.7
Medtr5g076810 Medicago truncatula HOM05D000218 ORTHO05D001192 1.7e-06 57.0 133 30.1
Medtr5g076720 Medicago truncatula HOM05D000390 ORTHO05D001192 3.9e-06 55.8 119 32.8
Ciclev10013760m.g Citrus clementina HOM05D007651 ORTHO05D001192 5.0e-06 55.5 142 34.5
Medtr7g094390 Medicago truncatula HOM05D000390 ORTHO05D001192 5.0e-06 55.5 118 28.8
Medtr5g076820 Medicago truncatula HOM05D000390 ORTHO05D001192 8.6e-06 54.7 113 31.9
PGSC0003DMG401016693 Solanum tuberosum HOM05D000390 ORTHO05D001192 8.6e-06 54.7 113 30.1
TPR.G18878 Trifolium pratense HOM05D000390 ORTHO05D001192 8.6e-06 54.7 138 28.3


User provided reference genes

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