Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 8.9e-86 320.5 191 100.0
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 5.4e-83 311.2 191 97.4
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 6.0e-74 281.2 191 90.1
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 1.3e-68 263.5 193 74.6
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 4.0e-62 241.9 189 75.1
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 5.3e-62 241.5 191 74.3
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 6.9e-62 241.1 189 69.8
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 9.0e-62 240.7 189 68.8
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 3.4e-61 238.8 189 70.4
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 9.9e-61 237.3 191 67.0
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 9.9e-61 237.3 194 70.6
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.3e-60 236.9 189 67.7
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.3e-60 236.9 189 67.7
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 2.9e-60 235.7 192 75.0
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 4.9e-60 235.0 189 69.3
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 8.4e-60 234.2 190 68.9
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.9e-59 233.0 191 66.5
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 3.2e-59 232.3 191 66.5
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 3.2e-59 232.3 189 69.3
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 7.1e-59 231.1 191 64.4
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 6.0e-58 228.0 191 70.7
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 7.9e-58 227.6 187 65.2
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 2.3e-57 226.1 189 65.6
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 6.7e-57 224.6 191 65.4
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 6.7e-57 224.6 191 65.4
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 6.7e-57 224.6 192 70.3
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 1.5e-56 223.4 191 64.4
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.9e-56 223.0 189 65.1
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 3.3e-56 222.2 189 65.1
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 4.3e-56 221.9 191 64.9
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 4.3e-56 221.9 189 64.0
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.7e-55 218.8 191 64.9
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 8.1e-55 217.6 189 64.0
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 1.8e-54 216.5 189 65.1
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 3.1e-54 215.7 189 64.0
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 9.0e-54 214.2 190 61.1
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 2.6e-53 212.6 191 71.7
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 7.6e-53 211.1 191 70.7
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 1.3e-52 210.3 191 70.7
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 1.7e-52 209.9 189 61.9
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 2.2e-52 209.5 189 61.9
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 6.5e-52 208.0 194 58.8
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 8.4e-52 207.6 191 61.8
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 8.4e-52 207.6 189 61.4
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 4.2e-51 205.3 193 62.7
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.2e-50 203.8 193 62.7
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.6e-50 203.4 190 58.4
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 1.6e-50 203.4 189 62.4
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 3.5e-50 202.2 192 72.4
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 4.6e-50 201.8 241 52.7
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 7.9e-50 201.1 194 61.9
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.0e-49 200.7 189 58.2
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 1.3e-49 200.3 191 60.2
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 2.3e-49 199.5 191 58.6
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.1e-49 198.4 188 59.0
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 6.7e-49 198.0 191 58.6
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 8.7e-49 197.6 197 60.9
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.1e-48 197.2 189 61.4
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 5.7e-48 194.9 183 62.8
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 7.4e-48 194.5 191 57.6
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 1.6e-47 193.4 174 69.5
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 8.2e-47 191.0 191 57.6
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 4.1e-46 188.7 194 55.2
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 9.0e-46 187.6 189 54.0
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 2.6e-45 186.0 197 55.8
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 5.9e-45 184.9 189 56.1
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 7.6e-45 184.5 177 60.5
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.3e-44 183.7 197 56.3
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 1.3e-44 183.7 191 53.9
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 2.2e-44 183.0 189 56.1
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 2.2e-44 183.0 190 55.3
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 2.9e-44 182.6 189 55.0
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 2.9e-44 182.6 194 55.7
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 2.9e-44 182.6 191 56.0
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 3.8e-44 182.2 180 57.8
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 5.0e-44 181.8 195 57.4
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.1e-43 180.6 187 55.1
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 3.2e-43 179.1 190 53.7
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 5.5e-43 178.3 191 58.6
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 4.6e-42 175.3 190 52.1
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 1.0e-41 174.1 190 59.5
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 3.0e-41 172.6 191 55.0
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 3.9e-41 172.2 191 56.0
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 5.1e-41 171.8 190 52.6
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 5.1e-41 171.8 190 52.6
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.5e-40 170.2 189 59.8
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.5e-40 170.2 189 59.8
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.9e-40 169.9 193 51.8
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 4.3e-40 168.7 192 51.6
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 5.7e-40 168.3 189 49.7
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 9.7e-40 167.5 199 55.3
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 9.7e-40 167.5 196 52.6
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 9.7e-40 167.5 191 55.5
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 2.2e-39 166.4 186 52.2
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 2.8e-39 166.0 190 55.8
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 3.1e-38 162.5 199 46.2
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 5.3e-38 161.8 168 53.6
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 9.1e-38 161.0 193 51.8
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 2.6e-37 159.5 190 57.4
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 3.4e-37 159.1 218 51.8
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 1.0e-36 157.5 189 49.2
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 6.5e-36 154.8 145 59.3
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 1.1e-35 154.1 189 49.2
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 1.4e-35 153.7 191 45.5
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 5.5e-35 151.8 189 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 3.6e-34 149.1 189 45.0
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 3.6e-34 149.1 187 48.1
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 3.0e-33 146.0 147 57.8
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 3.9e-33 145.6 172 51.2
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 2.6e-32 142.9 212 43.9
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 3.4e-29 132.5 167 55.7
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 7.7e-29 131.3 144 52.8
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 6.5e-28 128.3 188 42.0
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 5.5e-27 125.2 124 59.7
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.2e-26 124.0 146 52.7
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.2e-26 124.0 137 51.8
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 1.6e-26 123.6 192 41.1
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.6e-26 123.6 74 87.8
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 7.9e-26 121.3 82 76.8
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.8e-25 120.2 82 75.6
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 3.3e-24 115.9 144 50.7
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 9.7e-24 114.4 82 72.0
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 1.1e-22 110.9 110 57.3
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 1.1e-22 110.9 197 38.1
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 2.6e-21 106.3 155 49.0
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 3.5e-21 105.9 144 46.5
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 4.5e-21 105.5 59 91.5
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 5.5e-19 98.6 84 59.5
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 2.1e-18 96.7 102 52.9
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 6.1e-18 95.1 79 64.6
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.4e-17 94.0 121 54.5
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 5.7e-16 88.6 135 45.9
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 1.8e-14 83.6 66 72.7
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 9.1e-14 81.3 84 54.8
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 9.4e-11 71.2 88 45.5
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 5.2e-09 65.5 87 43.7
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 2.6e-08 63.2 177 27.7
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 4.4e-08 62.4 90 42.2
Actinidia26604 Actinidia chinensis HOM05D005762 ORTHO05D006823 8.3e-07 58.2 78 48.7


User provided reference genes

Program Settings