Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3311 Fragaria x ananassa HOM05D004977 ORTHO05D006454 4.1e-111 404.8 217 100.0
FAN21G3176 Fragaria x ananassa HOM05D004977 ORTHO05D006454 1.0e-53 214.2 122 96.7
FAN16G1264 Fragaria x ananassa HOM05D004977 ORTHO05D006454 2.5e-52 209.5 122 95.9
FvH4_3g28250 Fragaria vesca HOM05D004977 ORTHO05D006454 1.9e-44 183.3 127 86.6
FAN11G1922 Fragaria x ananassa HOM05D004977 ORTHO05D006454 3.1e-42 176.0 131 83.2
RcHm_v2.0_Chr5g0051061 Rosa chinensis HOM05D004977 ORTHO05D006454 1.0e-32 144.4 132 73.5
Prupe.8G068000 Prunus persica HOM05D004977 ORTHO05D006454 1.3e-21 107.5 128 56.2
MD07G1072700 Malus domestica HOM05D004977 ORTHO05D006454 6.7e-21 105.1 129 55.8
MD05G1047200 Malus domestica HOM05D004977 ORTHO05D006454 8.7e-21 104.8 131 54.2
Gohir.A05G395800 Gossypium hirsutum HOM05D004977 ORTHO05D006454 1.1e-18 97.8 127 51.2
Gohir.D04G019200 Gossypium hirsutum HOM05D004977 ORTHO05D006454 6.9e-18 95.1 127 48.8
Gorai.012G023000 Gossypium raimondii HOM05D004977 ORTHO05D006454 6.9e-18 95.1 127 48.8
Phvul.011G100500 Phaseolus vulgaris HOM05D004977 ORTHO05D006454 3.4e-17 92.8 137 48.2
Haze_23597 Corylus avellana HOM05D004977 ORTHO05D006454 4.5e-17 92.4 132 53.0
CSS0048805 Camellia sinensis var. sinensis HOM05D004977 ORTHO05D006454 5.9e-17 92.0 148 50.0
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 1.0e-16 91.3 148 43.9
MD02G1244300 Malus domestica HOM05D004977 ORTHO05D006454 2.2e-16 90.1 125 55.2
VMungo1127G1403 Vigna mungo HOM05D004977 ORTHO05D006454 6.5e-16 88.6 138 47.1
Sabra04G0149200 Salix brachista HOM05D004977 ORTHO05D006454 2.5e-15 86.7 133 51.9
Thecc.10G121800 Theobroma cacao HOM05D004977 ORTHO05D006454 4.2e-15 85.9 131 48.9
COL.COLO4_16322 Corchorus olitorius HOM05D004977 ORTHO05D006454 5.5e-15 85.5 127 48.0
Actinidia04910 Actinidia chinensis HOM05D004977 ORTHO05D006454 1.6e-14 84.0 157 40.8
Duzib114G0826 Durio zibethinus HOM05D004977 ORTHO05D006454 2.1e-14 83.6 127 44.9
Glyma.12G096100 Glycine max HOM05D004977 ORTHO05D006454 4.6e-14 82.4 138 44.2
vmacro14316 Vaccinium macrocarpon HOM05D004977 ORTHO05D006454 4.6e-14 82.4 139 43.9
TAR633G0771 Trochodendron aralioides HOM05D004977 ORTHO05D006454 7.9e-14 81.6 142 43.7
Lsat_1_v5_gn_4_27921 Lactuca sativa HOM05D004977 ORTHO05D006454 1.4e-13 80.9 138 50.7
Manes.04G055000 Manihot esculenta HOM05D004977 ORTHO05D006454 2.3e-13 80.1 131 45.0
Potri.001G213900 Populus trichocarpa HOM05D004977 ORTHO05D006454 5.1e-13 79.0 126 49.2
Lj3g0003647 Lotus japonicus HOM05D004977 ORTHO05D006454 8.8e-13 78.2 144 43.1
Oeu058189.1 Olea europaea HOM05D004977 ORTHO05D006454 8.8e-13 78.2 138 47.1
CiPaw.13G126500 Carya illinoinensis HOM05D004977 ORTHO05D006454 1.5e-12 77.4 129 48.1
Glyma.06G308700 Glycine max HOM05D004977 ORTHO05D006454 1.5e-12 77.4 135 42.2
Ah.02g126710 Amaranthus hybridus HOM05D001549 ORTHO05D003098 2.0e-12 77.0 135 45.9
THA.LOC104810945 Tarenaya hassleriana HOM05D004977 ORTHO05D006454 2.0e-12 77.0 135 40.7
Sc11g0002670 Simmondsia chinensis HOM05D004977 ORTHO05D006454 3.3e-12 76.3 137 47.4
Lalb_Chr01g0005801 Lupinus albus HOM05D004977 ORTHO05D006454 5.7e-12 75.5 143 44.1
Ciclev10027762m.g Citrus clementina HOM05D004977 ORTHO05D006454 9.7e-12 74.7 130 51.5
TWI31G0709 Tripterygium wilfordii HOM05D004977 ORTHO05D006454 9.7e-12 74.7 139 44.6
MELO3C014528.2 Cucumis melo HOM05D004977 ORTHO05D006454 2.8e-11 73.2 156 46.2
Thhalv10012587m.g Eutrema salsugineum HOM05D004977 ORTHO05D006454 3.7e-11 72.8 133 42.1
Hund25154 Selenicereus undatus HOM05D004977 ORTHO05D006454 3.7e-11 72.8 137 46.7
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 4.8e-11 72.4 145 46.2
TPR.G4657 Trifolium pratense HOM05D004977 ORTHO05D006454 4.8e-11 72.4 127 43.3
Nn6g34596 Nelumbo nucifera HOM05D004977 ORTHO05D006454 6.3e-11 72.0 140 44.3
vmacro04053 Vaccinium macrocarpon HOM05D004977 ORTHO05D006454 1.1e-10 71.2 148 43.2
CsaV3_6G038660 Cucumis sativus L. HOM05D004977 ORTHO05D006454 1.4e-10 70.9 152 40.1
Aqoxy1G00589 Aquilegia oxysepala HOM05D004977 ORTHO05D006454 1.8e-10 70.5 147 41.5
EL10Ac6g14670 Beta vulgaris HOM05D004977 ORTHO05D006454 2.4e-10 70.1 138 46.4
BcaC03g13854 Brassica carinata HOM05D004977 ORTHO05D006454 3.1e-10 69.7 130 43.8
Aa31LG1G13410 Aethionema arabicum HOM05D004977 ORTHO05D006454 5.3e-10 68.9 132 40.9
BcaB05g22754 Brassica carinata HOM05D004977 ORTHO05D006454 5.3e-10 68.9 139 40.3
Sp6g23180 Schrenkiella parvula HOM05D004977 ORTHO05D006454 5.3e-10 68.9 134 43.3
TWI79G0798 Tripterygium wilfordii HOM05D004977 ORTHO05D006454 5.3e-10 68.9 128 42.2
CARHR191520 Cardamine hirsuta HOM05D004977 ORTHO05D006454 6.9e-10 68.6 133 42.1
Dinv21726 Davidia involucrata HOM05D004977 ORTHO05D006454 6.9e-10 68.6 127 45.7
Sed0002287 Sechium edule HOM05D004977 ORTHO05D006454 1.2e-09 67.8 144 37.5
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 1.2e-09 67.8 138 44.9
GSVIVG01037357001 Vitis vinifera HOM05D004977 ORTHO05D006454 1.2e-09 67.8 88 53.4
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 1.5e-09 67.4 129 39.5
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 1.5e-09 67.4 129 39.5
Eucgr.J00591 Eucalyptus grandis HOM05D004977 ORTHO05D006454 2.0e-09 67.0 135 43.0
QL01p019084 Quercus lobata HOM05D004977 ORTHO05D006454 3.4e-09 66.2 150 40.7
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 2.2e-08 63.5 134 41.0
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 5.0e-08 62.4 134 39.6
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 1.1e-07 61.2 82 48.8
MSTRG.21010 Avicennia marina HOM05D004977 ORTHO05D006454 1.4e-07 60.8 136 38.2
arahy.Tifrunner.gnm1.ann1.78MUYP Arachis hypogaea HOM05D004977 ORTHO05D006454 1.9e-07 60.5 122 39.3
ATR0697G081 Amborella trichopoda HOM05D004977 ORTHO05D006454 7.2e-07 58.5 161 37.3
Medtr4g050180 Medicago truncatula HOM05D004977 ORTHO05D006454 9.4e-07 58.2 136 36.8
AL6G32970 Arabidopsis lyrata HOM05D004977 ORTHO05D006454 1.2e-06 57.8 93 40.9
Carub.0006s1965 Capsella rubella HOM05D004977 ORTHO05D006454 1.2e-06 57.8 99 43.4
QL01p019105 Quercus lobata HOM05D004977 ORTHO05D006454 1.6e-06 57.4 130 43.1
arahy.Tifrunner.gnm1.ann1.7R5ZBL Arachis hypogaea HOM05D004977 ORTHO05D006454 2.1e-06 57.0 113 38.9
PGR044G2329 Punica granatum HOM05D004977 ORTHO05D006454 2.7e-06 56.6 147 40.8
PSO339G5000 Papaver somniferum HOM05D004977 ORTHO05D006454 4.7e-06 55.8 111 39.6
AUR62003055 Chenopodium quinoa HOM05D004977 ORTHO05D006454 6.1e-06 55.5 131 38.9
CANSAT25G3123 Cannabis sativa HOM05D004977 ORTHO05D006454 7.9e-06 55.1 135 43.7


User provided reference genes

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