Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.6e-165 585.5 335 100.0
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 8.1e-159 563.9 353 93.5
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.8e-158 562.8 353 93.5
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.0e-158 561.6 353 93.2
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.5e-157 559.7 353 93.5
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 6.2e-151 537.7 353 90.1
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 3.1e-134 482.3 353 83.3
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 2.6e-128 462.6 353 78.5
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 1.3e-127 460.3 353 80.2
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 3.3e-120 435.6 352 68.2
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 4.4e-120 435.3 339 77.3
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 5.5e-115 418.3 352 65.1
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 6.1e-114 414.8 352 67.0
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.0e-113 414.1 354 73.2
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.5e-112 410.2 352 63.9
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.5e-112 410.2 358 64.5
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 5.7e-112 408.3 339 75.2
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 2.2e-111 406.4 352 62.8
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 6.3e-111 404.8 352 62.8
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 8.2e-111 404.4 332 67.8
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.1e-110 404.1 351 63.2
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.4e-110 402.9 336 72.9
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 1.6e-109 400.2 352 71.9
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.2e-108 396.4 351 63.8
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 2.2e-108 396.4 339 64.0
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 2.9e-108 396.0 340 64.4
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 3.8e-108 395.6 356 61.8
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 6.5e-108 394.8 315 67.9
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 8.5e-108 394.4 356 62.1
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.5e-107 393.7 352 62.2
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 1.9e-107 393.3 352 62.5
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 3.2e-107 392.5 340 64.4
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 5.5e-107 391.7 351 63.8
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 7.2e-107 391.3 296 81.4
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 1.2e-106 390.6 346 70.5
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 2.1e-106 389.8 355 62.0
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 2.1e-106 389.8 352 63.4
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 2.1e-106 389.8 352 63.1
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 3.6e-106 389.0 337 62.3
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 1.0e-105 387.5 344 63.7
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 1.0e-105 387.5 356 61.0
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 1.8e-105 386.7 326 65.0
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 1.8e-105 386.7 345 69.0
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 3.0e-105 386.0 297 69.4
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 3.0e-105 386.0 338 65.1
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 4.0e-105 385.6 357 61.3
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 5.2e-105 385.2 358 60.1
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 6.8e-105 384.8 343 63.0
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 8.8e-105 384.4 343 63.3
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 8.8e-105 384.4 359 60.7
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.2e-104 384.0 352 61.4
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 2.0e-104 383.3 359 68.2
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.6e-104 382.9 340 63.8
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.4e-104 382.5 352 62.8
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 4.4e-104 382.1 326 64.7
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 1.7e-103 380.2 353 61.2
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 2.2e-103 379.8 356 59.8
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 2.8e-103 379.4 360 60.8
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 4.8e-103 378.6 358 59.5
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 4.8e-103 378.6 357 61.9
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 6.3e-103 378.3 308 67.2
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 8.3e-103 377.9 316 64.9
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.8e-102 376.7 354 68.6
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 2.4e-102 376.3 352 61.1
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 3.1e-102 375.9 357 69.7
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 4.1e-102 375.6 327 64.2
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 7.0e-102 374.8 337 69.1
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.6e-101 373.6 302 66.6
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 1.6e-101 373.6 353 60.1
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.0e-101 373.2 315 62.9
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.0e-101 373.2 301 66.4
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 5.9e-101 371.7 317 62.5
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 5.9e-101 371.7 317 62.5
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 5.9e-101 371.7 345 58.8
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.3e-100 370.5 317 62.1
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-99 367.5 315 62.5
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 1.1e-99 367.5 306 67.6
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 1.5e-99 367.1 314 62.7
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 2.5e-99 366.3 304 66.4
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 3.2e-99 365.9 354 59.3
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 3.2e-99 365.9 353 59.2
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 7.2e-99 364.8 316 64.6
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.2e-98 364.0 315 61.9
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 2.1e-98 363.2 341 60.7
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.1e-98 363.2 319 64.6
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 2.8e-98 362.8 317 61.8
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 2.8e-98 362.8 355 60.0
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 3.6e-98 362.5 314 62.1
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 6.1e-98 361.7 352 59.1
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 8.0e-98 361.3 366 66.9
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 8.0e-98 361.3 338 68.6
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 2.3e-97 359.8 338 68.3
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 3.0e-97 359.4 319 61.1
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 5.2e-97 358.6 293 67.6
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 6.8e-97 358.2 348 67.5
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 2.0e-96 356.7 331 60.7
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 4.4e-96 355.5 316 61.7
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.3e-95 354.0 365 60.5
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 1.3e-95 354.0 343 60.3
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.7e-95 353.6 331 60.4
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 3.7e-95 352.4 317 61.8
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 8.3e-95 351.3 354 59.0
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 3.1e-94 349.4 334 61.4
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 2.7e-93 346.3 319 69.9
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 2.5e-91 339.7 353 55.5
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 7.3e-91 338.2 335 56.4
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.0e-89 334.3 317 61.2
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 1.8e-89 333.6 326 58.9
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 6.8e-89 331.6 234 73.5
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 5.2e-81 305.4 300 57.3
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 2.0e-80 303.5 258 64.7
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 7.5e-80 301.6 260 63.5
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 6.4e-79 298.5 301 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 1.1e-78 297.7 233 68.7
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-78 297.7 331 54.1
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 2.0e-77 293.5 349 51.9
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 6.6e-76 288.5 307 54.4
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 2.8e-74 283.1 233 66.1
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 4.4e-72 275.8 269 68.8
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.7e-68 263.8 353 49.3
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 6.6e-68 261.9 235 58.3
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.3e-63 247.7 177 76.3
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 4.9e-63 245.7 146 87.7
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 2.4e-62 243.4 233 55.4
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.9e-54 217.2 221 51.6
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 7.8e-53 211.8 289 46.7
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.4e-49 200.3 143 72.7
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 9.9e-40 168.3 100 85.0
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 2.1e-37 160.6 101 79.2
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 2.1e-37 160.6 101 79.2
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 6.0e-37 159.1 168 52.4
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 2.5e-22 110.5 102 56.9
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.4e-20 104.8 59 88.1
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.2e-16 91.7 59 74.6
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.8e-15 86.7 208 33.2


User provided reference genes

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