Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-121 440.3 323 100.0
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.5e-120 436.0 323 99.1
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.1e-119 433.0 323 78.9
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 2.8e-116 422.5 336 77.7
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-112 410.6 258 96.1
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 4.7e-111 405.2 337 74.8
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.0e-97 360.9 204 95.6
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.2e-92 343.2 272 72.4
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.8e-91 340.1 273 70.7
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.2e-90 337.4 272 71.7
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 1.2e-90 337.4 278 71.2
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.6e-90 337.0 274 70.4
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.0e-90 336.7 277 71.1
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.7e-90 336.3 270 71.5
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.0e-89 334.3 274 70.1
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.7e-89 333.6 274 69.7
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 2.3e-89 333.2 272 71.0
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 3.2e-88 329.3 272 70.6
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 3.2e-88 329.3 274 69.0
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 9.5e-88 327.8 274 70.4
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 2.1e-87 326.6 336 65.8
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.1e-87 326.6 283 67.8
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 6.1e-87 325.1 272 69.5
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.0e-87 324.7 283 67.5
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 2.0e-85 320.1 283 66.4
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 2.0e-85 320.1 270 70.4
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 2.6e-85 319.7 276 69.2
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.4e-85 319.3 274 69.0
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 5.7e-85 318.5 279 74.9
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 9.8e-85 317.8 274 69.0
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.3e-84 317.4 282 67.4
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 4.9e-84 315.5 339 61.4
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.4e-83 313.9 276 74.6
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 9.2e-83 311.2 274 67.5
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.6e-82 310.5 281 67.6
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 2.7e-82 309.7 280 66.1
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.9e-81 306.2 283 65.4
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.9e-81 306.2 270 67.4
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.9e-80 303.5 280 65.4
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 5.6e-80 302.0 375 55.7
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 9.5e-80 301.2 262 69.1
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 2.3e-78 296.6 298 65.1
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 6.8e-78 295.0 273 66.3
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 8.9e-78 294.7 273 63.4
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 3.4e-77 292.7 268 64.9
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 7.5e-77 291.6 278 63.3
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.3e-76 290.8 272 64.7
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 4.9e-76 288.9 274 64.6
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 6.4e-76 288.5 250 66.8
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 6.4e-76 288.5 277 65.7
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.4e-75 287.3 283 63.6
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 4.1e-75 285.8 274 63.9
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.2e-74 284.3 283 62.5
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 6.0e-74 282.0 274 63.9
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.0e-73 281.2 284 63.0
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.3e-73 280.8 279 62.4
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 3.9e-73 279.3 279 63.4
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 5.0e-73 278.9 276 63.8
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.9e-72 276.9 271 60.5
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 2.5e-72 276.6 291 59.8
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.3e-72 275.8 228 70.6
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 9.5e-72 274.6 272 66.2
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 6.2e-71 271.9 277 63.2
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.1e-70 271.2 271 59.8
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.3e-70 270.0 273 64.1
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.1e-70 269.6 267 62.9
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 4.0e-70 269.2 276 61.2
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 6.8e-70 268.5 278 61.2
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-69 267.7 272 58.5
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 4.4e-69 265.8 278 61.2
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 7.5e-69 265.0 279 60.2
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.9e-68 263.1 284 56.0
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 4.9e-68 262.3 260 60.4
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 6.4e-68 261.9 254 59.4
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.4e-68 261.9 265 60.4
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 1.1e-67 261.2 262 59.5
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.4e-67 260.8 278 62.2
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 7.0e-67 258.5 278 57.2
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 2.0e-66 256.9 272 60.3
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 2.7e-66 256.5 268 61.9
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 4.6e-66 255.8 267 60.3
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 6.0e-66 255.4 266 60.5
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.0e-65 254.6 258 60.5
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 3.9e-65 252.7 275 60.4
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 3.9e-65 252.7 272 58.8
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.6e-63 247.3 286 57.3
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.8e-62 243.8 283 62.9
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.6e-61 240.0 271 55.7
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 3.4e-61 239.6 273 59.3
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.9e-59 233.8 269 62.5
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 3.2e-59 233.0 278 61.5
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 1.2e-58 231.1 277 59.6
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.6e-58 230.7 212 65.6
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 2.3e-57 226.9 275 59.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.3e-57 226.9 275 59.6
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 6.6e-57 225.3 275 59.6
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 6.6e-57 225.3 275 59.6
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.1e-56 224.6 275 59.3
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.5e-56 223.4 212 61.3
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 4.3e-56 222.6 279 60.2
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.3e-56 222.6 271 57.6
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 2.1e-55 220.3 279 58.8
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 6.2e-55 218.8 198 65.7
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.4e-54 216.9 289 54.3
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.6e-53 213.4 281 52.0
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 4.4e-53 212.6 285 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 7.6e-53 211.8 234 55.6
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 1.7e-52 210.7 204 61.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.7e-52 210.7 204 61.8
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.9e-52 209.9 258 52.7
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 4.9e-52 209.1 226 55.8
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 8.4e-52 208.4 286 54.2
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 5.4e-51 205.7 298 53.7
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 3.9e-49 199.5 189 63.0
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 8.7e-49 198.4 230 53.0
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 6.2e-47 192.2 199 58.8
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.5e-45 187.6 241 49.8
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 3.4e-45 186.4 299 47.5
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.1e-43 181.4 266 45.5
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.2e-42 177.9 265 48.3
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.6e-42 177.6 226 50.9
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 6.0e-42 175.6 233 49.4
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 7.8e-42 175.3 232 49.6
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 5.1e-41 172.6 215 57.7
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.3e-39 167.9 226 50.0
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.6e-37 160.2 125 71.2
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 9.9e-37 158.3 161 60.2
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 2.2e-36 157.1 127 66.9
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 7.9e-34 148.7 287 44.6
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 1.1e-32 144.8 222 49.1
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 5.8e-29 132.5 274 40.5
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 2.9e-28 130.2 145 60.7
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 8.4e-28 128.6 336 45.5
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 6.2e-23 112.5 114 61.4
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.1e-16 91.7 142 43.7
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.9e-16 90.9 151 37.7
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.3e-16 90.1 85 62.4
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.9e-13 79.3 119 78.2
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 9.7e-08 62.0 58 62.1


User provided reference genes

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