Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.3e-276 955.7 470 100.0
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 7.0e-233 810.4 450 90.7
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 5.0e-215 751.1 794 55.0
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 1.9e-214 749.2 808 54.3
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.5e-214 748.8 798 54.5
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.8e-212 742.7 788 55.1
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 8.6e-207 723.8 792 53.2
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 3.8e-186 655.2 804 48.1
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 3.1e-180 635.6 804 46.9
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 1.9e-161 573.2 791 44.0
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 2.5e-161 572.8 809 43.4
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 1.3e-159 567.0 785 43.3
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 6.3e-157 558.1 784 43.1
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 2.6e-155 552.7 803 42.2
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 1.0e-154 550.8 803 42.1
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 1.3e-154 550.4 803 42.0
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 2.0e-150 536.6 603 49.6
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 5.7e-150 535.0 787 40.8
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 1.3e-149 533.9 796 41.2
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 4.8e-149 531.9 603 49.1
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 1.4e-148 530.4 791 42.0
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 5.3e-148 528.5 798 40.1
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 5.3e-148 528.5 794 40.8
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 9.1e-148 527.7 610 48.9
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 2.9e-146 522.7 559 49.6
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 5.0e-146 521.9 787 41.0
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 8.5e-146 521.2 613 47.6
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 2.5e-145 519.6 779 40.7
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 4.2e-145 518.8 592 49.0
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 5.5e-145 518.5 796 39.6
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 4.7e-144 515.4 594 49.2
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 6.1e-144 515.0 596 48.8
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 7.9e-144 514.6 593 48.9
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 1.0e-143 514.2 907 37.9
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 2.3e-143 513.1 593 48.6
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 3.0e-143 512.7 593 48.4
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 6.7e-143 511.5 593 48.4
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 6.7e-143 511.5 596 48.8
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 2.0e-142 510.0 792 39.8
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 2.0e-142 510.0 809 38.6
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 3.3e-142 509.2 593 48.6
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 4.4e-142 508.8 593 48.4
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 5.7e-142 508.4 586 48.6
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 9.7e-142 507.7 593 48.6
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 2.2e-141 506.5 792 39.6
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 6.3e-141 505.0 597 47.4
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 6.3e-141 505.0 597 46.1
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 1.1e-140 504.2 597 46.2
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 1.4e-140 503.8 593 47.7
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 1.8e-140 503.4 593 47.9
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 1.8e-140 503.4 596 47.7
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 4.1e-140 502.3 801 38.1
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 5.3e-140 501.9 801 37.8
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 7.0e-140 501.5 593 47.7
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 9.1e-140 501.1 795 39.1
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 9.1e-140 501.1 596 47.7
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 3.5e-139 499.2 789 39.2
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 4.5e-139 498.8 586 48.1
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 3.2e-137 492.7 596 46.6
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 4.2e-137 492.3 574 47.0
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 7.2e-137 491.5 868 36.6
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 1.2e-136 490.7 565 47.3
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 1.6e-136 490.3 565 47.8
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 4.7e-136 488.8 619 45.6
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 8.0e-136 488.0 592 45.9
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 8.0e-136 488.0 590 46.3
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 1.0e-135 487.6 598 46.2
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.0e-134 483.4 281 87.5
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 1.3e-133 480.7 810 38.0
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 2.8e-133 479.6 597 45.9
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 1.3e-130 470.7 590 45.6
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 5.0e-130 468.8 602 44.2
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 3.6e-128 462.6 587 45.5
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 5.2e-127 458.8 690 41.6
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.4e-124 449.9 532 47.7
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 6.5e-122 441.8 466 50.4
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 4.7e-120 435.6 592 42.9
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.7e-117 426.0 208 98.6
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 4.5e-115 419.1 317 65.3
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 5.9e-115 418.7 639 40.4
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 8.6e-114 414.8 308 66.6
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 1.1e-113 414.5 590 41.5
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 2.5e-113 413.3 589 41.3
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 4.1e-108 396.0 447 48.5
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 5.9e-107 392.1 442 48.0
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 8.6e-90 335.1 609 34.8
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 4.0e-87 326.2 282 56.7
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 2.2e-85 320.5 607 34.9
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 6.0e-83 312.4 598 34.6
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 7.8e-83 312.0 603 33.2
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 2.8e-80 303.5 281 53.7
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 1.7e-77 294.3 199 66.8
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 4.9e-69 266.2 189 66.7
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.1e-68 262.3 197 62.9
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.4e-60 237.3 121 97.5
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 7.9e-59 232.3 596 29.4
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 3.7e-48 196.8 113 85.8
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 1.1e-47 195.3 113 84.1
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.2e-46 191.8 530 27.5
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 1.2e-46 191.8 113 85.8
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 2.0e-46 191.0 113 83.2
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 2.6e-46 190.7 109 87.2
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 3.8e-45 186.8 620 26.1
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.5e-44 184.1 320 35.0
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 7.1e-44 182.6 306 37.3
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 1.8e-42 177.9 107 83.2
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 6.7e-42 176.0 308 34.7
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 8.7e-42 175.6 113 79.6
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 1.1e-41 175.3 111 78.4
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 2.5e-41 174.1 267 39.3
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 8.2e-40 169.1 110 74.5
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 5.3e-39 166.4 225 40.4
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 1.2e-38 165.2 276 37.3
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.5e-38 164.9 119 68.9
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.0e-34 150.6 92 77.2
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 9.1e-31 139.0 86 69.8
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 5.9e-22 109.8 252 31.7
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.0e-18 99.0 106 46.2
FvH4_5g39264 Fragaria vesca HOM05D000731 ORTHO05D004906 1.8e-18 98.2 56 91.1
FAN08G1746 Fragaria x ananassa HOM05D003919 ORTHO05D005006 5.2e-18 96.7 56 89.3
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.1e-17 95.5 106 44.3
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 2.6e-17 94.4 115 42.6
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 2.0e-09 68.2 37 81.1
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 2.0e-09 68.2 74 45.9
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 2.6e-09 67.8 33 90.9
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 3.1e-07 60.8 120 35.0
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 9.1e-07 59.3 116 36.2
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.7e-06 56.2 75 30.7


User provided reference genes

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