Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 2966.0 1721 100.0
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 0.0e+00 2723.0 1739 91.1
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 2482.6 1883 82.2
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 2478.0 1802 85.5
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 0.0e+00 2334.3 1745 81.2
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1769.6 1696 61.0
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1647.9 1719 57.5
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1323.5 730 94.9
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1236.5 796 88.3
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1216.1 1707 46.4
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1211.8 1704 46.4
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1211.1 1715 46.1
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 1167.1 1705 46.3
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1101.7 1717 43.4
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1101.7 1717 43.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1079.7 1716 43.4
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 4.6e-306 1055.4 1761 41.7
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 4.7e-303 1045.4 1822 41.1
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 6.2e-303 1045.0 1735 42.0
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.9e-297 1025.8 1719 41.4
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 3.3e-296 1022.7 1730 41.1
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 7.3e-296 1021.5 1735 42.0
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 2.0e-293 1013.4 1682 41.4
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 9.3e-291 1004.6 1696 42.2
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 6.2e-287 991.9 1760 40.7
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.4e-283 979.9 1713 41.6
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.9e-281 972.6 1775 40.6
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.9e-280 970.3 1807 38.6
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.4e-278 964.1 1722 42.6
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 8.7e-273 944.9 1737 39.1
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 1.3e-271 941.0 1613 40.2
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.9e-267 927.2 1688 39.9
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.5e-256 891.0 1635 40.4
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 2.8e-255 886.7 1633 39.7
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 3.4e-253 879.8 1701 38.8
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 6.5e-252 875.5 1839 37.1
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.4e-251 874.4 1679 38.3
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 7.2e-251 872.1 1663 38.6
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 9.4e-251 871.7 2046 35.2
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 2.7e-250 870.2 1663 38.5
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 2.3e-249 867.1 1688 38.8
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 3.7e-247 859.8 1810 38.4
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.8e-246 857.4 1730 36.9
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 5.3e-246 855.9 1774 36.8
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 6.5e-244 849.0 1768 36.7
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 9.4e-243 845.1 1752 38.2
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 2.1e-242 844.0 1767 37.2
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 3.9e-241 839.7 1679 39.2
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 1.5e-240 837.8 1263 44.2
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.8e-239 833.6 1688 37.3
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 4.1e-238 829.7 1666 37.1
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.9e-236 823.5 1739 36.2
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 3.2e-235 820.1 1682 36.9
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 5.5e-235 819.3 1747 36.5
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 2.7e-234 817.0 1662 37.7
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 4.0e-233 813.1 1699 36.8
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 4.0e-233 813.1 1699 37.1
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 5.2e-233 812.8 1673 37.5
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 7.5e-232 808.9 1728 36.1
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 1.4e-230 804.7 1770 35.5
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.8e-230 804.3 1661 37.0
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 3.1e-230 803.5 1623 37.6
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.2e-228 797.3 1740 35.8
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.4e-225 788.1 1633 37.8
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 6.5e-220 769.2 1637 35.9
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 1.5e-219 768.1 1617 36.6
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.8e-218 763.8 1642 38.5
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 1.2e-216 758.4 1720 34.5
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.3e-215 755.0 1727 35.5
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 7.0e-214 749.2 1088 44.1
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.0e-212 745.3 1543 37.9
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 5.2e-209 733.0 1659 36.5
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.8e-206 724.5 1695 34.5
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.2e-202 711.8 1720 34.4
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.2e-202 711.8 1667 34.9
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 3.1e-193 680.6 1700 33.1
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.7e-188 664.8 1707 32.6
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.9e-187 661.4 1683 34.0
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.1e-185 655.6 918 44.0
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 9.2e-182 642.5 1617 34.4
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 1.0e-172 612.5 1434 36.2
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 4.5e-168 597.0 1664 31.6
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 6.2e-162 576.6 1381 35.4
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.9e-158 565.1 1625 31.8
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 7.1e-158 563.1 1595 30.5
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 7.9e-149 533.1 980 40.7
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 9.0e-145 519.6 1383 32.8
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 9.0e-145 519.6 1383 32.8
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 6.5e-127 460.3 905 39.7
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.3e-124 451.8 800 37.8
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 2.9e-119 434.9 877 36.0
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.1e-110 406.4 900 34.1
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.8e-100 372.5 444 43.9
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.0e-96 359.0 909 35.2
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 4.7e-93 347.8 1012 29.5
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.9e-82 312.0 618 34.6
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 7.0e-81 307.4 886 33.0
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 1.7e-79 302.8 1083 27.0
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 3.3e-78 298.5 1677 25.2
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 2.6e-75 288.9 816 34.3
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.3e-74 286.6 593 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.7e-71 276.2 1176 27.3
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.0e-67 262.7 475 36.0
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 3.2e-65 255.4 1024 31.1
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.1e-64 252.7 615 35.4
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 4.0e-60 238.4 633 35.4
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.4e-57 229.9 237 50.6
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.1e-56 226.1 456 37.3
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 5.1e-55 221.5 745 30.5
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 1.1e-54 220.3 796 30.9
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.0e-51 209.5 498 34.3
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.6e-51 207.6 216 59.3
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 9.9e-51 207.2 241 48.5
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 6.4e-50 204.5 154 68.8
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 5.4e-49 201.4 657 32.1
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.1e-46 193.7 146 63.0
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.6e-45 189.9 236 50.4
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 1.4e-44 186.8 231 51.9
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 1.5e-43 183.3 189 48.7
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 5.8e-43 181.4 242 41.3
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 5.8e-43 181.4 203 51.2
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 5.1e-39 168.3 197 50.3
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.7e-39 167.9 354 37.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 9.6e-38 164.1 354 36.7
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.1e-36 160.6 334 37.1
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.2e-34 152.9 641 29.8
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 2.9e-34 152.5 647 31.1
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.5e-33 149.4 330 36.1
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.5e-33 148.3 1003 27.3
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 4.8e-29 135.2 192 44.8
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 6.9e-28 131.3 136 54.4
FAN07G1051 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.0e-26 127.5 78 85.9
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.2e-26 126.3 88 68.2
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.4e-25 123.6 838 26.1
FAN21G3487 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.4e-25 123.6 78 84.6
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.5e-25 122.9 158 40.5
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.5e-25 122.9 213 40.4
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 7.9e-24 117.9 136 50.0
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 3.9e-23 115.5 140 40.7
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 8.2e-21 107.8 80 63.8
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 7.9e-16 91.3 273 35.2
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.4e-15 90.5 115 53.0
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.3e-14 85.9 245 26.5
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.3e-13 84.0 69 55.1
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.8e-12 80.1 209 28.7
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.0e-11 76.6 127 34.6
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 1.3e-10 73.9 66 66.7
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 6.5e-10 71.6 340 28.5
Cre07.g313500 Chlamydomonas reinhardtii HOM05D051285 ORTHO05D005117 6.5e-10 71.6 412 24.3
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 5.5e-09 68.6 339 28.3
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 7.2e-09 68.2 70 50.0
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 1.8e-07 63.5 117 34.2
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 4.4e-06 58.9 85 34.1


User provided reference genes

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