Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 0.0e+00 1331.2 772 100.0
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 0.0e+00 1244.2 775 94.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 0.0e+00 1231.1 775 94.3
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 0.0e+00 1226.8 775 94.1
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 0.0e+00 1223.0 775 93.8
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 0.0e+00 1171.8 776 91.5
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.6e-311 1072.4 779 84.0
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.7e-300 1035.8 779 81.9
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 7.8e-298 1026.9 778 81.4
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 6.7e-257 891.0 780 73.3
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 4.3e-256 888.3 779 73.4
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 3.7e-255 885.2 779 72.5
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 3.7e-255 885.2 775 73.7
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.1e-254 883.6 776 73.2
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.1e-254 883.6 776 74.5
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.1e-254 883.6 776 74.5
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 2.4e-254 882.5 781 73.1
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 2.4e-254 882.5 814 58.8
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.2e-253 880.2 784 72.2
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 4.6e-250 868.2 770 73.1
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.5e-248 862.4 780 72.8
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 3.3e-248 862.1 785 72.1
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.3e-247 860.1 780 71.5
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 3.7e-247 858.6 798 68.7
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 6.3e-247 857.8 780 71.4
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.4e-246 855.9 777 70.8
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.6e-245 852.4 789 70.0
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 5.9e-245 851.3 777 70.5
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.0e-244 850.5 662 69.2
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.0e-244 850.5 775 71.1
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.1e-243 847.0 781 71.1
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.9e-243 846.3 833 68.1
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 4.2e-243 845.1 660 67.6
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 5.1e-241 838.2 790 70.4
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.0e-240 836.3 777 70.1
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 4.4e-240 835.1 774 71.4
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.3e-239 833.6 869 64.2
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.7e-239 833.2 792 68.4
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.8e-239 832.4 776 69.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.8e-239 832.4 792 68.4
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.8e-238 829.7 801 68.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.5e-237 825.5 785 70.2
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 3.5e-237 825.5 775 70.1
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 5.9e-237 824.7 774 69.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 8.5e-236 820.8 778 69.0
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-235 820.5 778 70.7
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-235 820.5 779 70.6
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.9e-235 819.7 779 70.6
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.9e-235 819.7 781 69.5
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-235 819.3 778 70.6
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 4.2e-235 818.5 780 68.6
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 4.2e-235 818.5 778 71.0
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 3.6e-234 815.5 812 65.3
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.0e-233 812.4 777 70.7
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 4.0e-233 812.0 783 69.7
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.5e-232 810.1 781 68.4
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 3.3e-232 808.9 781 68.2
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 7.4e-232 807.7 779 68.4
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.7e-231 806.6 782 69.2
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 2.2e-231 806.2 778 68.1
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 2.8e-231 805.8 781 67.9
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.8e-230 803.1 801 65.3
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.8e-230 803.1 811 57.1
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 9.1e-230 800.8 780 67.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.6e-229 799.3 789 66.0
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 5.9e-229 798.1 817 57.9
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 1.9e-227 793.1 780 68.5
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.6e-226 790.0 778 68.4
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.0e-225 787.3 778 68.3
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.0e-225 785.4 802 66.2
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 5.2e-225 785.0 778 67.7
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 4.4e-224 781.9 785 67.4
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 7.5e-224 781.2 775 68.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.3e-223 780.4 660 65.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 8.3e-223 777.7 785 67.1
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.1e-222 777.3 775 66.6
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.4e-222 776.9 775 65.5
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.4e-222 776.2 776 65.5
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.1e-222 775.8 803 59.3
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 7.7e-221 771.2 811 64.5
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.8e-220 768.8 823 63.2
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.5e-219 766.1 777 66.5
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 6.1e-218 761.5 868 62.0
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 2.6e-216 756.1 775 65.4
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 9.8e-216 754.2 708 69.8
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 4.9e-215 751.9 777 64.7
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-213 746.9 777 65.3
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.5e-213 745.7 777 65.9
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 7.7e-213 744.6 778 65.8
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 2.9e-212 742.7 775 64.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 8.6e-212 741.1 777 64.7
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.6e-210 736.9 775 64.3
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 2.8e-210 736.1 775 64.4
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.0e-209 734.2 784 62.4
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 9.8e-208 727.6 776 64.3
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.4e-206 723.0 779 63.3
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.0e-205 719.9 777 63.1
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.0e-200 703.4 791 51.7
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 7.5e-200 701.4 810 60.9
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.7e-199 700.3 779 63.3
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 6.8e-193 678.3 819 60.1
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 4.9e-191 672.2 778 62.9
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.9e-190 670.2 551 78.8
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 5.1e-188 662.1 835 58.1
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 2.8e-186 656.4 777 60.4
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 9.2e-182 641.3 593 62.1
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.7e-178 629.0 1272 43.6
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.4e-177 626.7 734 62.0
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.4e-174 616.7 779 55.2
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 2.5e-163 580.1 790 54.6
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.4e-158 564.3 451 65.4
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 2.4e-153 547.0 779 55.7
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 5.8e-152 542.3 784 53.7
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.4e-150 537.7 545 55.2
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.0e-144 517.3 789 54.1
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.7e-143 514.2 780 55.3
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 4.6e-141 506.1 792 52.3
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.5e-136 491.1 440 59.3
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 8.5e-111 405.6 653 41.5
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.1e-109 401.0 361 81.4
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.5e-107 394.8 366 79.0
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-102 377.5 383 76.0
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.8e-99 365.5 405 53.8
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.7e-98 363.6 304 89.5
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.8e-84 318.2 408 49.3
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.0e-80 304.7 357 51.5
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-73 281.6 300 53.3
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.9e-70 271.6 496 38.1
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-70 270.8 159 81.1
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 7.6e-67 259.6 874 39.1
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.1e-65 255.8 775 30.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.0e-63 249.2 235 56.2
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 2.7e-56 224.6 481 34.9
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.3e-55 222.2 719 30.2
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 5.1e-55 220.3 142 73.9
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-47 194.9 237 47.3
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.3e-42 179.1 237 45.6
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-39 167.9 106 77.4
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-37 161.4 94 83.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 5.8e-35 153.7 151 54.3
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-34 152.9 237 41.4
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-31 141.7 82 82.9
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.3e-30 137.9 111 62.2
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-29 136.0 82 76.8
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-29 135.6 84 78.6
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 4.5e-27 127.5 93 72.0
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-25 121.3 67 79.1
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-24 119.4 99 65.7
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 7.9e-24 116.7 167 47.3
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.9e-22 112.1 169 46.2
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.3e-22 111.3 70 74.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 4.3e-22 110.9 140 50.7
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.7e-21 107.8 60 86.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-21 107.8 61 80.3
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 6.3e-21 107.1 110 60.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-21 106.7 61 78.7
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 9.1e-20 103.2 82 70.7
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 3.4e-19 101.3 155 92.3
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.7e-19 100.1 77 63.6
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 6.5e-18 97.1 130 53.1
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 6.1e-16 90.5 154 88.3
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-15 87.4 50 76.0
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-11 76.3 60 68.3
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 5.0e-10 70.9 178 33.1
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 3.2e-09 68.2 87 47.1
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.7e-08 65.1 312 25.6
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 2.7e-08 65.1 43 74.4
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 3.3e-06 58.2 61 45.9


User provided reference genes

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