Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.8e-240 835.5 409 100.0
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.5e-239 832.4 409 99.5
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 5.7e-239 830.5 409 99.3
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.3e-238 829.3 409 99.3
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.3e-230 802.7 409 94.9
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 7.0e-229 797.0 409 94.4
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 8.8e-224 780.0 406 92.1
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.6e-223 778.5 406 91.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 5.7e-223 777.3 406 92.6
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 9.7e-223 776.5 405 91.9
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.3e-222 776.2 409 91.9
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.4e-221 772.7 407 91.2
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.1e-221 771.5 406 91.9
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 4.1e-221 771.2 406 91.4
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.2e-220 769.6 425 88.9
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 2.7e-220 768.5 406 91.4
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 4.5e-220 767.7 407 90.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 5.9e-220 767.3 409 90.2
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 7.7e-220 766.9 408 90.7
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.0e-219 766.5 406 91.4
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.0e-219 766.5 406 91.1
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.2e-219 765.4 406 91.4
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.9e-219 765.0 409 89.7
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.8e-219 764.6 409 90.0
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.8e-219 764.6 409 89.7
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.8e-219 764.6 409 89.5
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 6.5e-219 763.8 406 91.1
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 8.5e-219 763.5 406 91.1
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.1e-218 763.1 421 88.8
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.5e-218 762.7 406 90.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.5e-218 762.7 409 89.7
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.5e-218 762.7 409 90.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.9e-218 762.3 409 89.7
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.9e-218 762.3 409 90.0
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.5e-218 761.9 406 90.9
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.2e-218 761.1 409 90.0
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 4.2e-218 761.1 404 89.9
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 4.2e-218 761.1 409 89.5
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 5.5e-218 760.8 406 90.1
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 90.1
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 89.7
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 9.4e-218 760.0 404 90.3
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.2e-217 759.6 406 89.7
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.6e-217 759.2 404 89.4
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.7e-217 758.4 409 89.0
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.7e-217 758.4 404 90.1
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.7e-217 758.4 404 89.1
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 2.7e-217 758.4 409 89.2
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 6.1e-217 757.3 409 89.7
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 89.2
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 88.9
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 89.9
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.0e-216 756.5 405 88.9
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.3e-216 755.4 452 83.2
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.3e-216 755.4 409 88.5
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 89.7
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 3.0e-216 755.0 404 88.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 4.0e-216 754.6 409 88.3
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 4.0e-216 754.6 407 88.5
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 89.9
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 88.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 4.0e-216 754.6 411 89.3
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 6.8e-216 753.8 406 88.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 8.8e-216 753.4 404 88.9
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.2e-215 753.1 409 88.0
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.6e-215 751.9 409 87.3
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.6e-215 751.9 409 88.0
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.6e-215 751.9 404 88.6
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.4e-215 751.5 406 88.4
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 4.4e-215 751.1 406 88.9
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.5e-215 750.4 476 79.6
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 9.8e-215 750.0 409 87.3
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 9.8e-215 750.0 406 88.4
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.2e-214 748.8 409 87.8
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.8e-214 748.4 409 87.0
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 3.7e-214 748.0 410 86.8
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 4.8e-214 747.7 410 86.8
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 8.3e-214 746.9 409 87.3
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.1e-213 746.5 409 86.8
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 87.5
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.4e-213 745.3 405 87.9
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.1e-213 745.0 409 86.6
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 5.4e-213 744.2 407 88.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 86.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 87.0
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.0e-212 742.3 406 87.2
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.7e-212 741.9 409 87.3
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.7e-212 741.9 406 86.7
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.7e-212 741.9 406 87.2
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.5e-212 741.5 409 86.6
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 5.9e-212 740.7 409 86.8
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 7.7e-212 740.3 410 86.8
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.0e-211 740.0 410 86.8
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 86.3
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 86.6
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 86.3
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 86.3
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.5e-210 736.1 448 81.2
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.3e-210 734.9 396 88.6
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 3.3e-210 734.9 410 86.6
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 7.2e-210 733.8 410 86.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 7.2e-210 733.8 410 86.1
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.6e-209 732.6 406 86.7
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.4e-208 729.6 436 82.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 2.3e-208 728.8 409 85.1
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.0e-208 728.4 404 86.4
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.0e-207 725.7 405 85.2
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 4.4e-207 724.5 452 78.3
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 7.5e-207 723.8 406 85.2
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 7.5e-207 723.8 385 90.1
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.4e-205 719.5 406 85.0
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 5.9e-204 714.1 385 89.9
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 5.6e-202 707.6 377 90.5
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.3e-202 707.2 383 89.3
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.8e-200 702.6 520 70.0
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 8.3e-198 693.7 410 82.9
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.0e-196 689.1 413 80.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 4.3e-194 681.4 415 80.7
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 7.3e-194 680.6 356 91.0
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 4.7e-193 677.9 358 90.5
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 8.3e-190 667.2 406 81.8
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.1e-189 666.8 379 83.9
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.1e-189 666.8 409 77.5
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.1e-189 664.8 379 83.4
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 4.3e-186 654.8 358 87.2
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 5.6e-178 627.9 405 73.3
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 8.1e-177 624.0 404 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.8e-176 620.9 406 74.1
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 3.8e-174 615.1 380 74.5
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 8.7e-171 604.0 320 90.3
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.1e-165 587.0 390 72.1
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 9.3e-157 557.4 409 69.7
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 4.6e-156 555.1 387 72.9
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.9e-150 535.0 318 81.1
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.8e-145 518.5 310 83.5
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.6e-140 503.4 381 63.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.7e-129 466.8 245 91.8
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 5.3e-128 461.8 258 84.9
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.6e-127 459.5 238 92.4
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.2e-125 452.6 368 62.2
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 2.0e-119 433.3 385 56.1
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 2.5e-117 426.4 225 89.8
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 7.2e-109 398.3 239 80.3
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 3.2e-101 372.9 197 90.9
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.2e-80 303.1 404 44.3
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 4.9e-73 279.3 390 42.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.9e-72 277.3 180 76.1
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 6.2e-68 262.3 180 70.0
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 3.5e-63 246.5 141 82.3
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 6.0e-63 245.7 140 82.9
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-56 223.8 124 83.9
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.9e-48 197.6 130 76.2
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 5.1e-22 109.8 128 50.0
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.2e-20 104.4 58 77.6
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.4e-11 75.1 332 23.8
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 7.7e-10 69.3 337 23.4


User provided reference genes

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