Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 4185.9 2175 100.0
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 3665.5 2175 89.7
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 3627.8 2176 88.6
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 3616.2 2177 88.4
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 3351.6 2182 82.3
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2810.0 2181 69.4
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2800.4 2182 69.4
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2371.3 2191 60.0
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2350.5 2273 57.4
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2327.0 2192 57.8
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2324.7 2190 58.0
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2302.7 2183 58.1
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2284.6 2199 57.3
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2235.7 2187 55.8
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2229.1 2184 56.8
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2199.9 2187 55.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2197.2 2186 56.3
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2193.3 2199 55.4
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2191.0 2226 55.3
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2167.1 2184 55.8
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2162.9 2191 54.9
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2162.5 2205 54.4
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2129.0 2218 53.7
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2117.8 2266 52.7
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2048.9 2190 52.3
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2041.5 2196 52.4
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 2031.5 2191 51.9
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2020.4 2208 52.3
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 2017.3 2183 52.3
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2013.4 2003 56.0
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2010.7 2194 52.1
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 2000.7 2182 51.9
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1978.8 2180 50.3
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1964.5 2181 51.2
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1961.0 2181 50.6
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1940.2 2184 50.5
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1939.5 2182 49.9
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1935.2 2271 49.1
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1911.3 2206 50.1
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1907.1 2205 50.2
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1902.9 2255 49.1
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1900.6 2184 49.6
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1886.7 2280 48.1
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1881.7 2185 48.6
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1875.9 2182 48.8
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1874.0 2189 48.8
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1870.9 2188 48.9
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1869.0 2184 48.9
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1867.8 2185 48.6
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1864.7 2181 48.3
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1858.6 2183 48.6
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1837.0 2189 48.3
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1835.8 2192 48.3
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1827.8 2189 48.2
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1826.2 2192 48.1
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1825.1 2199 47.1
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1817.4 2214 47.2
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1791.9 2193 47.4
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1790.4 2183 46.9
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1790.0 2176 47.2
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1780.8 2186 47.7
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1780.0 2235 46.8
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1776.1 2288 45.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1762.7 2158 46.8
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1760.0 2204 46.6
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1756.9 2195 46.0
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1740.3 2230 45.7
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1723.4 2335 44.6
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1722.6 2188 46.4
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1681.4 2193 45.1
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1676.8 2182 45.6
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1669.8 2202 45.4
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1653.6 2039 46.3
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1649.8 1955 49.1
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1499.6 2202 41.3
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1449.1 1606 52.1
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1419.1 1713 49.4
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1411.7 2188 41.1
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1364.7 2584 36.3
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1342.4 1600 51.0
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1291.2 1612 47.3
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1228.0 1480 49.2
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 1.3e-302 1044.3 2225 33.3
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.6e-282 976.9 515 98.3
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.5e-279 966.5 1449 41.4
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.1e-277 961.4 2262 30.4
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.5e-274 951.0 705 72.2
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 4.2e-272 943.0 1022 52.7
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.6e-260 904.4 2213 30.5
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 5.7e-253 879.4 1435 39.4
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 4.1e-251 873.2 779 58.2
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.0e-245 854.4 1028 47.3
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.6e-242 844.0 661 67.2
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.6e-239 834.7 586 70.8
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 3.5e-234 817.0 2276 27.9
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.7e-220 771.5 752 57.4
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 6.0e-202 709.9 738 51.9
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 3.0e-193 681.0 1543 32.5
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.0e-190 670.6 837 44.0
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 2.2e-188 664.8 475 71.6
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 6.6e-185 653.3 998 37.6
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.4e-171 608.2 705 46.7
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 7.1e-171 606.7 731 47.2
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.0e-157 562.0 796 47.5
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 3.4e-157 561.2 390 75.9
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.0e-141 508.8 773 41.8
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 1.0e-132 479.9 500 52.8
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.5e-128 466.1 421 60.1
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.5e-123 449.5 336 67.6
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 4.7e-122 444.5 2360 22.5
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 3.4e-112 411.8 605 42.5
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.9e-108 398.7 742 37.7
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 5.4e-102 377.9 665 37.0
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.5e-88 333.2 641 34.8
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.4e-78 300.1 215 68.8
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.4e-78 300.1 206 74.8
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.1e-78 298.5 201 70.6
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 7.1e-70 271.2 142 95.8
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 6.9e-57 228.0 171 67.8
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 2.6e-56 226.1 476 30.7
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 1.6e-45 190.3 127 74.8
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 5.6e-43 181.8 339 37.8
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 9.0e-41 174.5 583 28.5
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.8e-39 169.1 143 56.6
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.2e-37 164.1 397 31.2
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.6e-37 163.7 134 59.7
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-35 157.5 100 79.0
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 2.2e-31 143.3 166 45.8
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.6e-29 137.1 143 54.5
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.9e-27 130.2 510 26.9
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 8.2e-26 124.8 295 30.5
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.1e-25 124.4 90 65.6
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.1e-25 124.4 93 62.4
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.8e-25 123.6 89 66.3
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 5.3e-25 122.1 95 63.2
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 5.9e-24 118.6 124 49.2
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.2e-22 112.8 115 51.3
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 4.2e-22 112.5 122 45.9
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.6e-21 110.5 125 46.4
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 4.6e-21 109.0 157 38.9
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 8.8e-20 104.8 110 51.8
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 6.3e-18 98.6 137 43.1
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-17 97.8 89 58.4
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.2e-16 94.4 86 54.7
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.5e-16 94.0 66 72.7
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 3.8e-15 89.4 71 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 8.5e-15 88.2 147 34.0
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 3.2e-14 86.3 68 64.7
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.2e-13 84.3 113 47.8
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 4.7e-13 82.4 163 35.6
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 3.9e-12 79.3 69 53.6
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.1e-11 77.8 59 57.6
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.6e-11 76.6 193 28.5
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 9.7e-11 74.7 140 35.0
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 4.1e-09 69.3 56 53.6
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 7.0e-09 68.6 85 48.2
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 2.2e-07 63.5 106 39.6
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 1.1e-06 61.2 66 47.0
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 2.5e-06 60.1 95 46.3
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 3.2e-06 59.7 52 51.9
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 4.2e-06 59.3 105 31.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.2e-06 59.3 59 50.8
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 4.2e-06 59.3 68 45.6


User provided reference genes

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