Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.6e-258 894.0 448 100.0
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 5.6e-256 887.1 448 99.1
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.8e-254 882.1 448 98.2
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 2.0e-253 878.6 448 98.2
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 2.5e-216 755.4 457 83.4
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 3.8e-188 661.8 457 73.5
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 1.8e-182 642.9 456 71.9
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 2.4e-182 642.5 457 72.9
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 2.7e-181 639.0 419 75.2
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 4.2e-179 631.7 420 74.8
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 2.1e-178 629.4 431 72.6
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 5.7e-176 621.3 420 72.9
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 1.7e-175 619.8 419 72.6
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 8.3e-175 617.5 421 72.4
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 1.4e-174 616.7 418 73.0
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 7.0e-174 614.4 421 72.0
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 1.2e-173 613.6 423 72.6
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 1.2e-173 613.6 416 72.8
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 1.2e-173 613.6 419 72.6
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 7.8e-173 610.9 427 71.2
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 1.7e-172 609.8 423 72.8
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 2.9e-172 609.0 422 71.8
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 7.3e-171 604.4 429 70.2
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 9.5e-171 604.0 422 71.1
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 1.6e-170 603.2 421 70.8
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 1.6e-170 603.2 422 70.1
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 2.1e-170 602.8 419 69.7
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 2.8e-170 602.4 427 71.7
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 3.6e-170 602.1 420 70.7
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 4.7e-170 601.7 427 70.3
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 1.4e-169 600.1 419 70.9
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 7.5e-168 594.3 424 69.8
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 2.2e-167 592.8 421 70.3
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 2.2e-167 592.8 421 70.3
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 6.4e-167 591.3 422 69.7
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 8.3e-167 590.9 421 70.1
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 1.1e-166 590.5 420 69.8
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 1.9e-166 589.7 452 66.6
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 4.1e-166 588.6 421 69.8
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 9.2e-166 587.4 425 68.7
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.2e-165 587.0 421 68.6
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 3.5e-165 585.5 424 67.5
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 4.6e-165 585.1 421 68.6
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 5.0e-164 581.6 421 68.6
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 1.5e-163 580.1 422 70.1
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 1.5e-163 580.1 422 70.1
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 4.3e-163 578.6 424 68.4
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 5.6e-163 578.2 422 68.5
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 7.3e-163 577.8 439 67.2
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 9.5e-163 577.4 424 67.9
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 2.1e-162 576.2 424 68.4
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.8e-162 575.9 422 66.6
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 2.8e-162 575.9 412 69.7
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.3e-161 572.8 422 65.9
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 6.8e-161 571.2 421 66.0
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 2.9e-159 565.8 420 65.5
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 2.9e-159 565.8 420 65.5
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 6.4e-159 564.7 454 63.2
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.1e-158 563.9 424 64.9
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 1.1e-158 563.9 421 65.6
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 1.9e-158 563.1 421 65.3
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 4.1e-158 562.0 421 65.1
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 7.0e-158 561.2 433 64.9
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 9.2e-158 560.8 440 64.3
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.2e-157 560.5 421 64.8
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 2.1e-157 559.7 423 65.2
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 4.6e-157 558.5 423 64.8
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 1.0e-156 557.4 440 63.6
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.3e-156 557.0 444 62.2
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 1.3e-156 557.0 468 60.9
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 2.5e-155 552.7 422 67.1
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 3.3e-155 552.4 445 61.8
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 7.3e-155 551.2 418 65.6
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 2.1e-154 549.7 422 66.6
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 2.1e-154 549.7 419 64.9
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 2.8e-154 549.3 433 64.7
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 3.6e-154 548.9 448 62.7
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 3.6e-154 548.9 425 64.7
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 3.6e-154 548.9 422 66.6
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 3.6e-154 548.9 422 66.6
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 4.7e-154 548.5 422 66.6
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 2.3e-153 546.2 422 64.7
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 2.3e-153 546.2 423 63.1
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 4.0e-153 545.4 445 64.0
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 4.0e-153 545.4 418 64.4
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 6.8e-153 544.7 423 63.1
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 1.2e-152 543.9 425 63.8
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 1.5e-152 543.5 422 64.5
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 1.5e-152 543.5 531 56.3
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 5.8e-152 541.6 418 62.7
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 1.3e-151 540.4 447 61.3
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 2.9e-151 539.3 430 63.3
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 2.9e-151 539.3 422 63.0
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 5.4e-150 535.0 418 61.7
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 1.2e-149 533.9 419 63.2
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 1.1e-147 527.3 426 60.8
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 3.6e-146 522.3 430 60.7
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 7.6e-144 514.6 419 62.1
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 3.9e-140 502.3 431 55.9
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 5.3e-137 491.9 422 57.3
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 2.6e-136 489.6 414 58.9
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 1.9e-134 483.4 334 72.8
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 5.1e-132 475.3 426 56.1
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 8.1e-130 468.0 430 55.8
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 1.8e-129 466.8 354 65.5
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 2.6e-128 463.0 421 54.4
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 1.6e-125 453.8 439 51.0
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 9.6e-123 444.5 434 53.9
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 9.9e-120 434.5 434 54.8
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 1.3e-119 434.1 429 55.9
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 2.2e-119 433.3 296 70.3
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 2.5e-115 419.9 376 59.0
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 8.2e-114 414.8 425 47.8
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 4.9e-111 405.6 260 75.4
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 3.4e-104 382.9 244 75.8
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 2.0e-99 367.1 418 49.0
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 1.1e-86 324.7 192 79.2
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 7.7e-80 302.0 435 41.6
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 1.0e-68 265.0 235 54.5
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 5.5e-62 242.7 290 48.6
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 4.7e-61 239.6 182 65.9
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 2.2e-42 177.6 136 66.2
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 3.6e-29 133.7 99 63.6
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 9.3e-25 119.0 91 59.3
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 1.2e-24 118.6 88 64.8
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 1.1e-20 105.5 111 48.6
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 2.1e-13 81.3 367 23.4
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 8.4e-10 69.3 91 45.1


User provided reference genes

Program Settings