Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.5e-189 666.0 336 100.0
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 3.1e-174 615.1 317 98.4
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 2.2e-172 609.0 317 97.5
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 1.1e-163 580.1 317 92.7
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 1.0e-140 503.8 314 83.1
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 9.4e-139 497.3 316 82.9
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 3.0e-129 465.7 318 74.8
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 2.6e-128 462.6 309 76.7
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 4.4e-128 461.8 341 74.2
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 4.4e-128 461.8 306 77.5
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 9.7e-128 460.7 309 76.4
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 2.8e-127 459.1 308 76.3
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 3.1e-126 455.7 309 75.4
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 1.2e-125 453.8 309 75.1
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 1.5e-123 446.8 305 77.7
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.1e-122 443.0 316 72.2
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 1.0e-121 440.7 307 74.6
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 1.8e-121 439.9 309 74.4
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 5.2e-121 438.3 261 84.3
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 6.7e-121 438.0 311 73.0
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 2.6e-120 436.0 262 83.6
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 3.3e-120 435.6 262 83.6
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 5.7e-120 434.9 269 81.8
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 5.7e-120 434.9 310 72.9
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.7e-119 433.3 262 83.2
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 2.8e-119 432.6 309 73.5
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 8.3e-119 431.0 308 72.7
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 8.3e-119 431.0 264 82.2
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 8.3e-119 431.0 313 71.2
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 1.4e-118 430.3 310 71.9
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 1.4e-118 430.3 262 82.4
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.8e-118 429.9 307 72.0
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 5.3e-118 428.3 290 76.9
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 9.1e-118 427.6 265 80.0
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 9.1e-118 427.6 267 81.6
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 2.0e-117 426.4 287 76.7
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 2.7e-117 426.0 318 70.1
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 7.7e-117 424.5 317 70.7
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 1.0e-116 424.1 312 72.4
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 3.8e-116 422.2 310 71.0
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 3.8e-116 422.2 265 80.0
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 3.8e-116 422.2 312 72.8
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 6.5e-116 421.4 314 71.7
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 6.5e-116 421.4 310 70.6
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 8.5e-116 421.0 293 74.4
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 8.5e-116 421.0 267 79.0
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 1.9e-115 419.9 300 73.3
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 2.5e-115 419.5 273 80.2
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 3.2e-115 419.1 305 73.1
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 5.5e-115 418.3 307 70.4
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 8.0e-114 414.5 306 71.2
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 2.3e-113 412.9 263 77.9
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 1.5e-112 410.2 287 73.9
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 3.4e-112 409.1 293 72.7
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 5.7e-112 408.3 325 66.5
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 9.8e-112 407.5 272 76.5
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 1.3e-111 407.1 283 74.6
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 1.3e-111 407.1 249 81.9
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 1.7e-111 406.8 272 76.1
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 8.3e-111 404.4 242 81.8
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 8.3e-111 404.4 271 75.3
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.4e-110 403.7 257 79.8
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 1.2e-109 400.6 317 66.2
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 1.2e-109 400.6 249 81.1
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 4.5e-109 398.7 312 68.6
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 5.9e-109 398.3 266 75.9
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.0e-108 397.5 299 68.9
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 1.3e-108 397.1 248 79.4
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 2.5e-107 392.9 259 77.2
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.2e-104 384.0 241 80.1
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 2.0e-104 383.3 270 74.8
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 1.3e-103 380.6 310 65.2
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.2e-103 379.8 302 67.2
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.2e-103 379.8 234 81.2
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 2.8e-103 379.4 322 67.1
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 6.3e-103 378.3 299 67.9
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 1.1e-102 377.5 312 66.0
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 1.1e-102 377.5 312 66.0
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 2.4e-102 376.3 310 65.8
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.2e-101 374.0 310 64.5
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 4.5e-101 372.1 312 65.1
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 5.9e-101 371.7 306 64.4
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 7.8e-101 371.3 288 67.7
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 7.8e-101 371.3 240 77.5
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 7.8e-101 371.3 331 63.4
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 7.8e-101 371.3 219 86.3
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 1.3e-100 370.5 311 65.6
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.5e-99 367.1 248 74.2
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.5e-99 367.1 248 74.2
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 1.9e-99 366.7 332 63.3
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 3.3e-99 365.9 332 63.3
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 4.4e-96 355.5 266 71.4
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 6.4e-95 351.7 216 81.0
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 9.2e-94 347.8 265 64.5
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 3.5e-93 345.9 241 71.4
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 8.6e-92 341.3 318 61.3
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 1.1e-91 340.9 312 61.9
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 4.3e-91 339.0 243 72.4
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 9.5e-91 337.8 257 72.4
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.2e-90 337.4 255 71.8
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 1.1e-89 334.3 262 71.4
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 3.1e-89 332.8 223 77.1
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 3.1e-89 332.8 241 73.0
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 8.3e-87 324.7 249 66.3
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 3.6e-82 309.3 252 62.3
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 7.5e-80 301.6 243 62.6
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 2.9e-79 299.7 310 55.5
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 4.1e-78 295.8 220 70.9
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 2.1e-77 293.5 180 83.3
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 2.4e-70 270.0 196 73.0
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 4.6e-69 265.8 243 58.8
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 4.4e-64 249.2 247 57.5
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 1.6e-53 214.2 298 44.0
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 3.5e-53 213.0 130 83.1
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 6.7e-44 182.2 119 73.1
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 9.3e-38 161.8 112 72.3
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 1.2e-37 161.4 116 66.4
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 3.3e-35 153.3 95 73.7
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 5.7e-35 152.5 89 84.3
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.2e-29 134.8 86 76.7
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.1e-25 121.7 93 66.7
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 3.3e-11 73.6 64 64.1
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 3.3e-11 73.6 44 77.3
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 7.4e-11 72.4 46 76.1


User provided reference genes

Program Settings