Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2598 Fragaria x ananassa HOM05D003350 ORTHO05D003947 1.5e-18 95.1 46 100.0
FAN15G0612 Fragaria x ananassa HOM05D003350 ORTHO05D003947 3.0e-11 70.9 31 100.0
FAN20G1613 Fragaria x ananassa HOM05D003350 ORTHO05D003947 3.0e-11 70.9 31 100.0
FAN27G0230 Fragaria x ananassa HOM05D003350 ORTHO05D003947 3.0e-11 70.9 31 100.0
RcHm_v2.0_Chr6g0304781 Rosa chinensis HOM05D003350 ORTHO05D003947 1.1e-10 68.9 31 96.8
BcaC02g07076 Brassica carinata HOM05D003350 ORTHO05D003947 1.5e-10 68.6 32 90.6
A04p33970 Brassica napus HOM05D003350 ORTHO05D003947 1.5e-10 68.6 32 90.6
BolC4t28676H Brassica oleracea HOM05D003350 ORTHO05D003947 1.5e-10 68.6 32 90.6
BraA04t18858Z Brassica rapa HOM05D003350 ORTHO05D003947 1.5e-10 68.6 32 90.6
Duzib168G1024 Durio zibethinus HOM05D003350 ORTHO05D003947 1.5e-10 68.6 32 90.6
Gohir.A06G080800 Gossypium hirsutum HOM05D003350 ORTHO05D003947 1.5e-10 68.6 31 93.5
THA.LOC104815085 Tarenaya hassleriana HOM05D003350 ORTHO05D003947 1.5e-10 68.6 32 87.5
AL4G44880 Arabidopsis lyrata HOM05D003350 ORTHO05D003947 1.9e-10 68.2 32 87.5
AT2G45700 Arabidopsis thaliana HOM05D003350 ORTHO05D003947 1.9e-10 68.2 32 87.5
CARHR140930 Cardamine hirsuta HOM05D003350 ORTHO05D003947 1.9e-10 68.2 32 87.5
Prupe.1G401600 Prunus persica HOM05D003350 ORTHO05D003947 1.9e-10 68.2 31 93.5
FvH4_2g36980 Fragaria vesca HOM05D003350 ORTHO05D003947 2.5e-10 67.8 31 96.8
Lj7A207G10 Lonicera japonica HOM05D003350 ORTHO05D003947 2.5e-10 67.8 31 90.3
MELO3C016926.2 Cucumis melo HOM05D003350 ORTHO05D003947 3.3e-10 67.4 37 78.4
Sp4g27750 Schrenkiella parvula HOM05D003350 ORTHO05D003947 3.3e-10 67.4 32 87.5
Sc13g0011050 Simmondsia chinensis HOM05D003350 ORTHO05D003947 3.3e-10 67.4 31 90.3
BcaB06g29430 Brassica carinata HOM05D003350 ORTHO05D003947 4.3e-10 67.0 32 87.5
Carub.0004s2836 Capsella rubella HOM05D003350 ORTHO05D003947 4.3e-10 67.0 32 84.4
Thhalv10001326m.g Eutrema salsugineum HOM05D003350 ORTHO05D003947 4.3e-10 67.0 32 84.4
Nitab4.5_0000508g0050 Nicotiana tabacum HOM05D003350 ORTHO05D003947 4.3e-10 67.0 31 90.3
Nitab4.5_0007819g0010 Nicotiana tabacum HOM05D003350 ORTHO05D003947 4.3e-10 67.0 31 90.3
Solyc08g067250.4 Solanum lycopersicum HOM05D003350 ORTHO05D003947 4.3e-10 67.0 31 90.3
Sopen08g021180 Solanum pennellii HOM05D003350 ORTHO05D003947 4.3e-10 67.0 31 90.3
Gohir.D06G080200 Gossypium hirsutum HOM05D003350 ORTHO05D003947 5.6e-10 66.6 31 90.3
Gorai.010G093400 Gossypium raimondii HOM05D003350 ORTHO05D003947 5.6e-10 66.6 31 90.3
PSO104G0144 Papaver somniferum HOM05D003350 ORTHO05D003947 5.6e-10 66.6 31 87.1
PSO421G0041 Papaver somniferum HOM05D003350 ORTHO05D003947 5.6e-10 66.6 31 87.1
C04p71770 Brassica napus HOM05D003350 ORTHO05D003947 7.3e-10 66.2 32 87.5
CSS0047763 Camellia sinensis var. sinensis HOM05D003350 ORTHO05D003947 1.2e-09 65.5 31 87.1
CsaV3_4G036180 Cucumis sativus L. HOM05D003350 ORTHO05D003947 1.2e-09 65.5 32 84.4
PGR044G1373 Punica granatum HOM05D003350 ORTHO05D003947 1.2e-09 65.5 31 87.1
Thecc.09G065900 Theobroma cacao HOM05D003350 ORTHO05D003947 1.2e-09 65.5 32 84.4
SGA_v2.0_scaffold147G36316 Striga asiatica HOM05D003350 ORTHO05D003947 1.6e-09 65.1 32 84.4
ClCG05G015900 Citrullus lanatus HOM05D003350 ORTHO05D003947 2.1e-09 64.7 32 84.4
Cc08_g07770 Coffea canephora HOM05D003350 ORTHO05D003947 2.1e-09 64.7 31 90.3
Haze_18326 Corylus avellana HOM05D003350 ORTHO05D003947 2.1e-09 64.7 31 87.1
Eucgr.C03174 Eucalyptus grandis HOM05D003350 ORTHO05D003947 2.1e-09 64.7 32 75.0
TWI34G1174 Tripterygium wilfordii HOM05D003350 ORTHO05D003947 2.1e-09 64.7 31 87.1
vmacro05109 Vaccinium macrocarpon HOM05D003350 ORTHO05D003947 2.1e-09 64.7 31 87.1
GSVIVG01035501001 Vitis vinifera HOM05D003350 ORTHO05D003947 2.1e-09 64.7 31 83.9
Atru.chr7.1818 Acer truncatum HOM05D003350 ORTHO05D003947 2.8e-09 64.3 32 81.2
Oeu030212.1 Olea europaea HOM05D003350 ORTHO05D003947 2.8e-09 64.3 31 83.9
SalBow4G0753 Salvia bowleyana HOM05D003350 ORTHO05D003947 2.8e-09 64.3 31 87.1
TAR624G0540 Trochodendron aralioides HOM05D003350 ORTHO05D003947 2.8e-09 64.3 31 83.9
Ah.13g073060 Amaranthus hybridus HOM05D003350 ORTHO05D003947 3.6e-09 63.9 31 87.1
DCAR_001246 Daucus carota HOM05D003350 ORTHO05D003947 3.6e-09 63.9 31 87.1
Dinv40937 Davidia involucrata HOM05D003350 ORTHO05D003947 3.6e-09 63.9 32 81.2
Manes.03G056300 Manihot esculenta HOM05D003350 ORTHO05D003947 3.6e-09 63.9 31 83.9
Peaxi162Scf00922g00028 Petunia axillaris HOM05D003350 ORTHO05D003947 3.6e-09 63.9 31 80.6
Rhsim07G0169900 Rhododendron simsii HOM05D003350 ORTHO05D003947 3.6e-09 63.9 31 83.9
Actinidia03541 Actinidia chinensis HOM05D003350 ORTHO05D003947 4.7e-09 63.5 31 87.1
Aqoxy7G01010 Aquilegia oxysepala HOM05D003350 ORTHO05D003947 4.7e-09 63.5 31 80.6
Ciclev10007634m.g Citrus clementina HOM05D003350 ORTHO05D003947 4.7e-09 63.5 31 83.9
Lsat_1_v5_gn_5_79200 Lactuca sativa HOM05D003350 ORTHO05D003947 4.7e-09 63.5 32 84.4
Potri.006G218300 Populus trichocarpa HOM05D003350 ORTHO05D003947 4.7e-09 63.5 31 83.9
Sabra06G0168300 Salix brachista HOM05D003350 ORTHO05D003947 4.7e-09 63.5 31 83.9
CiPaw.15G094000 Carya illinoinensis HOM05D003350 ORTHO05D003947 6.2e-09 63.2 31 83.9
AUR62002374 Chenopodium quinoa HOM05D003350 ORTHO05D003947 6.2e-09 63.2 31 83.9
CAN.G348.12 Capsicum annuum HOM05D003350 ORTHO05D003947 8.1e-09 62.8 31 87.1
Ca_15803_v3 Cicer arietinum L. HOM05D003350 ORTHO05D003947 8.1e-09 62.8 32 78.1
HanXRQChr12g0358911 Helianthus annuus HOM05D003350 ORTHO05D003947 8.1e-09 62.8 32 81.2
Lj1g0014882 Lotus japonicus HOM05D003350 ORTHO05D003947 1.1e-08 62.4 31 83.9
Sed0021455 Sechium edule HOM05D003350 ORTHO05D003947 1.1e-08 62.4 32 81.2
Glyma.06G058300 Glycine max HOM05D003350 ORTHO05D003947 1.4e-08 62.0 31 80.6
Lalb_Chr08g0244661 Lupinus albus HOM05D003350 ORTHO05D003947 1.4e-08 62.0 31 80.6
Medtr3g105470 Medicago truncatula HOM05D003350 ORTHO05D003947 1.4e-08 62.0 31 80.6
Hund25551 Selenicereus undatus HOM05D003350 ORTHO05D003947 1.4e-08 62.0 32 75.0
TPR.G21419 Trifolium pratense HOM05D003350 ORTHO05D003947 1.4e-08 62.0 31 80.6
MSTRG.25845 Avicennia marina HOM05D003350 ORTHO05D003947 1.8e-08 61.6 32 78.1
EL10Ac3g06070 Beta vulgaris HOM05D003350 ORTHO05D003947 1.8e-08 61.6 32 75.0
ECA234G4717 Erigeron canadensis HOM05D003350 ORTHO05D003947 3.1e-08 60.8 32 78.1
Migut.A00329 Erythranthe guttata HOM05D003350 ORTHO05D003947 3.1e-08 60.8 31 83.9
Zm00001eb100110 Zea mays HOM05D003350 ORTHO05D003947 4.0e-08 60.5 31 80.6
Phvul.009G084300 Phaseolus vulgaris HOM05D003350 ORTHO05D003947 5.2e-08 60.1 31 80.6
unitig_748.g8189 Utricularia gibba HOM05D003350 ORTHO05D003947 5.2e-08 60.1 30 83.3
Psat0s3617g0120 Pisum sativum HOM05D003350 ORTHO05D003947 6.8e-08 59.7 31 80.6
VMungo1309G0944 Vigna mungo HOM05D003350 ORTHO05D003947 6.8e-08 59.7 32 78.1
Nn6g35677 Nelumbo nucifera HOM05D003350 ORTHO05D003947 8.9e-08 59.3 31 71.0
CDE05G0719 Ceratophyllum demersum HOM05D003350 ORTHO05D003947 1.5e-07 58.5 31 74.2
arahy.Tifrunner.gnm1.ann1.8K54LH Arachis hypogaea HOM05D003350 ORTHO05D003947 2.0e-07 58.2 31 80.6
arahy.Tifrunner.gnm1.ann1.PY163H Arachis hypogaea HOM05D003350 ORTHO05D003947 2.0e-07 58.2 31 80.6
SEGI_09275 Sequoiadendron giganteum HOM05D003350 ORTHO05D003947 2.6e-07 57.8 33 63.6
HPP92_016228 Vanilla planifolia HOM05D003350 ORTHO05D003947 4.4e-07 57.0 29 75.9
AagrBONN_evm.TU.Sc2ySwM_344.5567 Anthoceros agrestis HOM05D003350 ORTHO05D003947 7.6e-07 56.2 30 73.3
SMO140G0067 Selaginella moellendorffii HOM05D003350 ORTHO05D003947 7.6e-07 56.2 31 74.2
ATR0681G114 Amborella trichopoda HOM05D003350 ORTHO05D003947 2.2e-06 54.7 29 72.4
Pp3c10_11880 Physcomitrium patens HOM05D003350 ORTHO05D003947 4.9e-06 53.5 30 63.3


User provided reference genes

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