Gene: Solyc08g067250.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g067250.4
  • Transcript Identifier Solyc08g067250.4.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 54390739-54400186 : positive

Gene Family Information

  • ID HOM05D003350
  • #Genes/#Species 204/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g067250.4.1
  • uniprot A0A3Q7HRG6
  • gene_id Solyc08g067250

Descriptions

  • Description DNA cross-link repair protein SNM1 (AHRD V3.3 *** A0A2I4EZZ1_9ROSI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0036297
IBA
GOA Databaseinterstrand cross-link repair
GO:0006303
IBA
GOA Databasedouble-strand break repair via nonhomologous end joining
GO:0031848
IBA
GOA Databaseprotection from non-homologous end joining at telomere
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT3G26680

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003684
IBA
GOA Databasedamaged DNA binding
GO:0035312
IBA
GOA Database5'-3' exodeoxyribonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013761 Sterile alpha motif/pointed domain superfamily
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR011084 DNA repair metallo-beta-lactamase
IPR001660 Sterile alpha motif domain
Mapman id Description
35.1 not assigned.annotated