Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 8.0e-31 136.3 64 100.0
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 8.0e-15 83.2 40 100.0
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 3.1e-14 81.3 39 100.0
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 7.0e-11 70.1 33 100.0
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.0e-11 70.1 33 100.0
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 7.0e-11 70.1 33 100.0
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 7.0e-11 70.1 43 83.7
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 7.0e-11 70.1 33 100.0
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 7.0e-11 70.1 43 83.7
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.6e-10 68.9 43 83.7
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.6e-10 68.9 43 83.7
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 1.6e-10 68.9 43 83.7
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 1.6e-10 68.9 43 83.7
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 2.7e-10 68.2 43 81.4
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 6.0e-10 67.0 33 97.0
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 7.8e-10 66.6 33 93.9
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 1.0e-09 66.2 43 79.1
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 1.3e-09 65.9 33 93.9
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.3e-09 65.9 33 93.9
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.3e-09 65.9 33 93.9
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.3e-09 65.9 33 93.9
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 1.3e-09 65.9 43 79.1
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 2.3e-09 65.1 43 76.7
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.3e-09 65.1 33 93.9
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 3.9e-09 64.3 33 90.9
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 3.9e-09 64.3 43 79.1
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 3.9e-09 64.3 43 79.1
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 3.9e-09 64.3 43 79.1
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.9e-09 64.3 43 79.1
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 5.0e-09 63.9 43 76.7
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 5.0e-09 63.9 43 76.7
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 6.6e-09 63.5 33 90.9
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 6.6e-09 63.5 44 75.0
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 6.6e-09 63.5 45 71.1
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 6.6e-09 63.5 33 90.9
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 6.6e-09 63.5 43 76.7
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 8.6e-09 63.2 33 87.9
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 1.1e-08 62.8 33 90.9
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 1.1e-08 62.8 45 68.9
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 1.1e-08 62.8 33 90.9
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 1.1e-08 62.8 33 90.9
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 1.1e-08 62.8 33 90.9
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 1.1e-08 62.8 33 90.9
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 1.1e-08 62.8 33 90.9
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.5e-08 62.4 33 90.9
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 1.9e-08 62.0 33 87.9
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 1.9e-08 62.0 45 68.9
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 1.9e-08 62.0 45 68.9
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 1.9e-08 62.0 45 68.9
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 1.9e-08 62.0 45 68.9
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 1.9e-08 62.0 45 68.9
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.9e-08 62.0 34 88.2
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 2.5e-08 61.6 33 84.8
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 2.5e-08 61.6 33 84.8
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 2.5e-08 61.6 33 84.8
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 3.3e-08 61.2 33 84.8
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 3.3e-08 61.2 33 87.9
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.3e-08 61.2 33 87.9
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.3e-08 61.2 33 87.9
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.3e-08 61.2 33 87.9
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 4.3e-08 60.8 53 60.4
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 4.3e-08 60.8 33 87.9
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 4.3e-08 60.8 33 87.9
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 4.3e-08 60.8 33 87.9
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 4.3e-08 60.8 33 87.9
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 4.3e-08 60.8 33 84.8
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 5.6e-08 60.5 33 87.9
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 5.6e-08 60.5 33 87.9
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 5.6e-08 60.5 33 87.9
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 7.3e-08 60.1 45 73.3
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 9.5e-08 59.7 33 84.8
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 9.5e-08 59.7 33 84.8
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 9.5e-08 59.7 33 87.9
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 9.5e-08 59.7 33 84.8
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 9.5e-08 59.7 33 84.8
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 9.5e-08 59.7 33 84.8
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 9.5e-08 59.7 33 84.8
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 9.5e-08 59.7 33 81.8
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.2e-07 59.3 31 87.1
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.2e-07 59.3 46 69.6
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 1.2e-07 59.3 33 84.8
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 1.2e-07 59.3 33 84.8
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 2.1e-07 58.5 30 90.0
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 2.1e-07 58.5 33 84.8
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 2.8e-07 58.2 45 64.4
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 2.8e-07 58.2 45 64.4
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 2.8e-07 58.2 45 64.4
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 2.8e-07 58.2 45 64.4
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 2.8e-07 58.2 45 64.4
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 2.8e-07 58.2 31 87.1
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 3.6e-07 57.8 33 84.8
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 3.6e-07 57.8 33 84.8
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 3.6e-07 57.8 33 84.8
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 3.6e-07 57.8 33 84.8
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 3.6e-07 57.8 33 84.8
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 4.7e-07 57.4 33 84.8
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 4.7e-07 57.4 33 84.8
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 4.7e-07 57.4 44 68.2
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 4.7e-07 57.4 33 84.8
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 6.2e-07 57.0 37 67.6
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 8.1e-07 56.6 39 76.9
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 8.1e-07 56.6 31 87.1
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 8.1e-07 56.6 33 81.8
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 8.1e-07 56.6 47 57.4
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 8.1e-07 56.6 33 81.8
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 8.1e-07 56.6 33 81.8
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 1.1e-06 56.2 37 78.4
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 1.1e-06 56.2 33 81.8
BolC2t10103H Brassica oleracea HOM05D064626 ORTHO05D042195 1.4e-06 55.8 54 55.6
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.4e-06 55.8 32 84.4
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 1.4e-06 55.8 33 81.8
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 1.8e-06 55.5 33 75.8
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 1.8e-06 55.5 33 75.8
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 1.8e-06 55.5 33 75.8
C02p40860 Brassica napus HOM05D064626 ORTHO05D042195 1.8e-06 55.5 54 55.6
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 1.8e-06 55.5 33 75.8
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 1.8e-06 55.5 33 75.8
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 1.8e-06 55.5 33 81.8
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 2.3e-06 55.1 45 64.4
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 3.1e-06 54.7 27 92.6
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 8.9e-06 53.1 26 92.3


User provided reference genes

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