Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.0e-241 837.0 470 100.0
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.7e-234 814.7 470 98.1
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.7e-232 807.0 470 96.8
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.7e-221 771.2 470 93.4
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.9e-186 655.6 349 96.3
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 5.0e-154 548.5 490 66.3
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 9.8e-94 348.2 502 48.8
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 5.6e-81 305.8 507 44.2
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.9e-59 232.3 267 51.3
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.1e-57 228.4 274 50.0
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.9e-57 227.6 276 49.6
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 7.4e-57 225.7 529 35.7
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.4e-55 221.5 522 35.6
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 4.0e-55 219.9 284 46.8
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 6.9e-55 219.2 294 47.6
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 6.9e-55 219.2 271 48.7
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 3.4e-54 216.9 229 52.0
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 1.3e-53 214.9 380 41.3
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.3e-53 214.9 261 48.7
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 4.2e-52 209.9 275 48.7
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 7.1e-52 209.1 254 48.4
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 2.1e-51 207.6 269 46.8
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 3.5e-51 206.8 262 48.5
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 3.5e-51 206.8 269 48.7
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 3.9e-50 203.4 490 35.3
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 5.1e-50 203.0 280 45.4
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 8.7e-50 202.2 285 46.7
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.1e-49 201.8 322 43.5
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.5e-49 201.4 265 47.9
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.9e-49 201.1 282 45.7
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.9e-49 201.1 267 44.9
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.9e-49 201.1 285 46.3
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.5e-49 200.7 312 44.2
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 4.3e-49 199.9 263 46.0
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 7.4e-49 199.1 310 42.6
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 9.6e-49 198.7 263 47.5
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 1.6e-48 198.0 277 45.1
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 4.8e-48 196.4 200 51.5
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 1.1e-47 195.3 341 41.1
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.4e-47 194.9 262 47.7
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.8e-47 194.5 240 51.2
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 3.1e-47 193.7 542 34.1
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 5.3e-47 193.0 264 44.3
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 6.9e-47 192.6 240 50.8
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 1.5e-46 191.4 286 44.1
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 5.8e-46 189.5 260 43.5
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 7.6e-46 189.1 509 34.6
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.0e-45 188.7 337 39.5
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.7e-45 188.0 199 50.8
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.2e-45 187.6 539 33.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 2.9e-45 187.2 294 41.8
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 2.9e-45 187.2 321 43.0
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 5.0e-45 186.4 305 41.6
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 6.5e-45 186.0 288 42.4
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.1e-44 185.3 284 41.5
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.5e-44 184.1 252 46.4
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 7.1e-44 182.6 211 50.2
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 2.7e-43 180.6 304 41.4
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 3.5e-43 180.3 293 43.0
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 4.6e-43 179.9 296 40.9
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.3e-42 178.3 172 55.8
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 5.1e-42 176.4 357 38.1
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 6.7e-42 176.0 225 45.8
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 5.7e-41 172.9 328 39.3
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 5.7e-41 172.9 285 42.5
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 2.2e-40 171.0 210 48.1
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 2.8e-40 170.6 275 41.1
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.8e-40 170.6 504 31.9
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 4.1e-39 166.8 206 48.5
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 1.2e-38 165.2 228 45.6
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 2.0e-38 164.5 361 38.5
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 2.0e-38 164.5 216 45.4
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 4.5e-38 163.3 205 46.8
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.0e-37 162.2 360 37.2
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.2e-37 161.0 361 38.2
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 7.2e-36 156.0 278 40.3
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 6.1e-35 152.9 226 42.5
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 7.9e-35 152.5 207 45.4
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.4e-34 151.8 300 38.7
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 2.3e-34 151.0 295 38.6
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 3.9e-34 150.2 207 44.9
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 3.9e-34 150.2 207 44.9
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 8.8e-34 149.1 300 38.0
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 1.5e-33 148.3 207 44.4
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 1.5e-33 148.3 207 44.4
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 1.5e-33 148.3 207 44.4
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.5e-33 148.3 278 39.2
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.5e-33 147.5 158 57.0
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 3.3e-33 147.1 382 30.9
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 5.7e-33 146.4 277 39.4
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 2.8e-32 144.1 312 35.6
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.8e-32 144.1 265 38.1
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.8e-31 141.4 350 34.9
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 3.1e-31 140.6 308 36.0
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.4e-30 137.1 163 47.2
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 1.0e-29 135.6 358 33.0
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.3e-29 135.2 179 43.6
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.9e-29 134.0 222 42.3
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 3.8e-29 133.7 253 37.2
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.4e-28 131.7 166 45.2
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.4e-26 125.2 179 44.1
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.4e-26 125.2 220 39.1
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 8.8e-26 122.5 139 47.5
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 3.7e-24 117.1 155 47.1
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.4e-23 115.2 265 36.2
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.9e-21 107.5 197 36.0
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 2.5e-20 104.4 179 42.5
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.1e-19 101.3 219 33.3
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 4.7e-19 100.1 235 33.6
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 1.4e-18 98.6 161 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 3.0e-18 97.4 152 43.4
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 9.7e-17 92.4 136 42.6
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 9.7e-17 92.4 80 58.8
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 2.8e-16 90.9 125 42.4
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 4.1e-15 87.0 204 33.8
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 1.2e-14 85.5 81 53.1
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.7e-13 81.6 169 32.0
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 5.0e-13 80.1 144 38.9
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 8.5e-13 79.3 126 41.3
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.1e-12 79.0 73 57.5
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 5.5e-12 76.6 76 52.6
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 8.0e-11 72.8 123 38.2
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 8.0e-11 72.8 210 30.5
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.2e-10 70.1 232 27.6
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.6e-09 67.8 141 33.3
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 5.7e-09 66.6 113 36.3
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 5.7e-09 66.6 72 48.6
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 5.7e-09 66.6 111 34.2
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 7.5e-09 66.2 123 34.1
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 9.8e-09 65.9 123 35.8
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.3e-08 65.5 199 30.7
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 1.7e-08 65.1 75 49.3
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.2e-08 64.7 123 34.1
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.2e-08 64.7 123 34.1
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.7e-08 63.9 82 43.9
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 3.7e-08 63.9 96 39.6
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 6.3e-08 63.2 158 31.6
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 6.3e-08 63.2 179 29.6
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.1e-07 62.4 113 33.6
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.8e-07 61.6 113 32.7
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 2.4e-07 61.2 113 32.7
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 2.4e-07 61.2 181 30.4
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.1e-07 60.8 135 29.6
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 3.1e-07 60.8 127 31.5
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 4.1e-07 60.5 208 29.3
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 5.4e-07 60.1 177 26.6
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 5.4e-07 60.1 177 26.6
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 7.0e-07 59.7 113 33.6
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.0e-07 59.7 117 34.2
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 9.1e-07 59.3 123 31.7
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 9.1e-07 59.3 142 30.3
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 1.2e-06 58.9 123 31.7
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.2e-06 58.9 185 29.7
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.2e-06 58.9 185 29.7
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.2e-06 58.9 185 29.7
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 1.2e-06 58.9 113 31.0
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 1.6e-06 58.5 113 32.7
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.6e-06 58.5 188 28.7
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 2.0e-06 58.2 136 31.6
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 2.0e-06 58.2 113 31.9
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 2.7e-06 57.8 113 31.9
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 2.7e-06 57.8 113 31.9
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 2.7e-06 57.8 123 29.3
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 2.7e-06 57.8 123 30.1
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 2.7e-06 57.8 123 30.1
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 2.7e-06 57.8 123 30.1
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 2.7e-06 57.8 123 29.3
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 2.7e-06 57.8 123 30.1
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 2.7e-06 57.8 113 31.0
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.7e-06 57.8 117 31.6
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 2.7e-06 57.8 148 30.4
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 3.5e-06 57.4 113 31.9
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 3.5e-06 57.4 113 31.9
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 3.5e-06 57.4 113 31.9
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.5e-06 57.4 113 32.7
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 3.5e-06 57.4 113 31.9
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 4.5e-06 57.0 70 47.1
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 4.5e-06 57.0 117 33.3
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 4.5e-06 57.0 42 64.3
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 4.5e-06 57.0 113 32.7
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 5.9e-06 56.6 113 32.7
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 5.9e-06 56.6 113 31.9
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 7.7e-06 56.2 113 31.0
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 7.7e-06 56.2 148 30.4
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 7.7e-06 56.2 113 33.6


User provided reference genes

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