Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 5.9e-168 594.3 349 100.0
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 3.0e-156 555.4 349 94.8
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.4e-148 530.0 353 87.8
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.3e-148 529.3 352 90.1
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 8.5e-127 457.6 359 78.8
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.7e-96 356.3 259 88.0
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 1.7e-87 327.0 359 61.6
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 1.9e-73 280.4 351 55.0
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 7.1e-73 278.5 320 58.4
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 1.2e-72 277.7 349 51.6
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 1.6e-72 277.3 372 55.1
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 8.7e-71 271.6 359 52.6
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 1.1e-70 271.2 318 55.0
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 2.1e-69 266.9 356 51.7
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 6.9e-68 261.9 355 49.9
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 9.0e-68 261.5 347 52.4
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 2.6e-67 260.0 322 52.5
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 1.7e-66 257.3 320 55.3
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 8.4e-66 255.0 278 62.9
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 7.1e-65 251.9 339 48.4
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 2.1e-64 250.4 275 62.2
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 2.1e-64 250.4 341 53.4
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 2.1e-64 250.4 276 59.8
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 6.0e-64 248.8 276 59.8
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 7.9e-64 248.4 359 52.1
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 7.9e-64 248.4 359 52.1
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 3.0e-63 246.5 377 50.1
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 1.1e-62 244.6 334 50.3
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 3.3e-62 243.0 370 44.9
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 7.4e-62 241.9 290 58.6
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 1.3e-61 241.1 323 49.2
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 2.1e-61 240.4 353 46.7
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 2.1e-61 240.4 278 56.8
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 3.7e-61 239.6 306 48.0
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 4.8e-61 239.2 324 50.6
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 4.8e-61 239.2 274 51.8
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 1.1e-60 238.0 302 54.0
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 1.4e-60 237.7 277 55.6
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 1.8e-60 237.3 281 51.6
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 2.4e-60 236.9 345 47.0
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 4.0e-60 236.1 355 51.0
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 6.9e-60 235.3 320 50.9
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 9.0e-60 235.0 295 49.2
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 9.0e-60 235.0 276 54.7
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 1.2e-59 234.6 273 50.9
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 1.5e-59 234.2 357 43.4
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 1.5e-59 234.2 371 49.1
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 2.6e-59 233.4 330 46.7
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 2.6e-59 233.4 277 51.3
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 4.5e-59 232.6 322 51.9
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 1.0e-58 231.5 266 60.5
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 1.3e-58 231.1 276 58.0
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 1.3e-58 231.1 333 49.5
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 1.3e-58 231.1 362 51.1
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 1.7e-58 230.7 323 50.5
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 1.7e-58 230.7 315 51.7
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 2.2e-58 230.3 287 53.3
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 2.9e-58 229.9 306 52.0
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 3.8e-58 229.6 377 48.0
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 4.9e-58 229.2 280 49.3
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 8.4e-58 228.4 329 51.7
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 1.1e-57 228.0 347 47.6
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 5.5e-57 225.7 304 52.6
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 1.2e-56 224.6 325 49.5
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 1.2e-56 224.6 310 48.1
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 1.6e-56 224.2 354 47.7
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 4.6e-56 222.6 316 51.3
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 1.3e-55 221.1 349 46.1
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 1.3e-55 221.1 358 48.0
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 1.8e-55 220.7 277 50.9
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 1.8e-55 220.7 272 51.8
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 2.3e-55 220.3 261 57.1
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 2.3e-55 220.3 347 49.9
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 2.3e-55 220.3 278 52.5
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 3.0e-55 219.9 309 45.0
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 5.1e-55 219.2 325 48.9
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 6.7e-55 218.8 323 50.8
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 8.7e-55 218.4 277 50.5
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.1e-54 218.0 276 54.3
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 1.5e-54 217.6 277 51.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.5e-54 216.9 275 54.5
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 3.7e-53 213.0 370 43.0
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 8.2e-53 211.8 331 47.4
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.8e-52 210.7 356 46.9
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 3.4e-51 206.5 335 46.3
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.7e-50 204.1 412 41.7
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 3.8e-50 203.0 279 47.7
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 3.8e-50 203.0 267 48.3
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 1.9e-49 200.7 346 42.2
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 2.1e-48 197.2 322 45.3
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 4.6e-48 196.1 236 52.1
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 6.1e-48 195.7 338 47.0
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 1.0e-47 194.9 272 47.8
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 1.9e-46 190.7 275 44.4
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.8e-44 184.1 299 43.1
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 3.4e-43 179.9 158 62.0
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 5.9e-43 179.1 307 42.7
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 4.4e-38 162.9 184 54.3
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 1.7e-37 161.0 288 47.6
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 3.1e-36 156.8 158 57.0
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 1.5e-35 154.5 250 49.6
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 9.7e-30 135.2 130 58.5
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 5.5e-25 119.4 257 37.7
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 1.7e-21 107.8 391 31.7
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 2.4e-20 104.0 122 52.5
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 3.1e-20 103.6 280 32.1
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 7.2e-17 92.4 329 29.5
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 3.4e-14 83.6 55 70.9
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 3.4e-14 83.6 258 31.8
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 1.0e-10 72.0 45 66.7
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.3e-10 71.6 196 35.2
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 1.9e-09 67.8 51 52.9
C09p65600 Brassica napus HOM05D000552 ORTHO05D003270 2.8e-08 63.9 171 42.1
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 3.6e-08 63.5 124 42.7
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 1.5e-06 58.2 149 31.5
Cre03.g200431 Chlamydomonas reinhardtii HOM05D006924 ORTHO05D008218 7.5e-06 55.8 182 29.7


User provided reference genes

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