Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.5e-200 701.0 354 100.0
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 3.2e-198 694.9 352 99.1
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.5e-191 670.2 356 94.7
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.6e-189 664.8 359 94.2
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 4.1e-177 624.8 356 88.2
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 2.4e-161 572.4 347 82.4
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.1e-156 557.0 352 79.8
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 3.1e-156 555.4 355 76.6
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 9.2e-145 517.3 323 77.1
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 6.2e-141 504.6 332 72.3
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 5.2e-140 501.5 336 73.2
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 6.8e-140 501.1 330 72.4
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.5e-139 500.0 322 74.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.5e-139 500.0 351 72.6
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.0e-139 499.6 336 71.4
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 3.4e-139 498.8 321 75.7
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 4.4e-139 498.4 339 71.4
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 9.9e-139 497.3 315 81.6
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.3e-138 496.9 338 73.4
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.7e-138 496.5 330 70.0
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.8e-138 495.4 316 75.9
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 6.4e-138 494.6 332 73.8
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 6.4e-138 494.6 323 75.5
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.4e-137 493.4 318 76.1
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.2e-137 492.3 321 73.8
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 3.2e-137 492.3 331 74.0
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.2e-137 492.3 358 70.1
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 4.1e-137 491.9 316 75.9
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 7.1e-137 491.1 316 75.9
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 9.2e-137 490.7 335 68.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 3.5e-136 488.8 331 73.1
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 7.8e-136 487.6 342 70.8
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 7.8e-136 487.6 349 69.3
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 7.8e-136 487.6 349 69.1
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 7.8e-136 487.6 310 75.8
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.3e-135 486.9 351 69.5
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.3e-135 486.1 339 69.9
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 8.7e-135 484.2 315 74.3
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.1e-134 483.8 349 68.8
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 3.3e-134 482.3 315 71.4
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 5.6e-134 481.5 317 73.2
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 9.6e-134 480.7 350 68.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.7e-133 478.4 325 71.7
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.4e-132 476.1 315 72.1
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 4.0e-132 475.3 322 70.8
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.2e-132 474.9 315 71.1
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 5.2e-132 474.9 337 68.5
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 5.8e-131 471.5 328 69.5
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 7.6e-131 471.1 350 66.9
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.9e-130 469.2 317 71.0
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 3.8e-130 468.8 323 70.6
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 6.4e-130 468.0 342 67.8
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.4e-129 466.1 316 70.9
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 3.2e-129 465.7 323 70.3
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 3.2e-129 465.7 318 71.1
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 4.2e-129 465.3 374 65.2
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 2.1e-128 463.0 323 69.7
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 3.5e-128 462.2 323 70.0
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 7.8e-128 461.1 323 70.0
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 7.8e-128 461.1 323 70.0
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.0e-127 460.7 318 69.8
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 1.7e-127 459.9 318 69.2
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 6.6e-127 458.0 318 68.9
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 8.7e-127 457.6 326 67.5
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.5e-126 456.8 309 71.2
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.5e-126 456.1 333 66.7
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 3.3e-126 455.7 332 66.3
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.6e-125 453.4 317 70.0
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.6e-125 453.4 319 69.6
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 6.9e-124 448.0 319 68.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 9.0e-124 447.6 336 65.5
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.5e-123 446.8 324 68.8
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 2.6e-123 446.0 338 65.7
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 7.6e-123 444.5 337 63.8
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 2.2e-122 443.0 329 65.7
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 8.4e-122 441.0 317 68.5
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 8.4e-122 441.0 316 67.1
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 2.4e-121 439.5 293 72.4
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 4.2e-121 438.7 319 67.1
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 5.4e-121 438.3 354 62.1
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.2e-120 437.2 321 67.0
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 4.6e-120 435.3 379 57.5
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 6.7e-119 431.4 321 66.4
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.1e-118 430.6 290 71.0
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.1e-118 430.6 290 71.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.1e-118 430.6 318 67.3
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.3e-118 428.7 318 66.4
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 6.2e-117 424.9 281 69.4
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 8.1e-117 424.5 311 66.6
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.8e-116 423.3 307 65.1
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 2.0e-115 419.9 311 65.9
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 3.4e-115 419.1 305 71.5
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 9.9e-115 417.5 311 65.3
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 9.9e-115 417.5 331 63.7
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.4e-113 413.7 317 64.7
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.4e-113 412.9 291 68.0
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 4.2e-113 412.1 314 63.7
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 5.5e-113 411.8 291 70.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 5.5e-113 411.8 331 62.8
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.9e-110 403.3 263 72.6
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.1e-108 397.5 274 69.0
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 1.8e-108 396.7 312 63.5
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 3.1e-108 396.0 312 63.8
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 5.8e-107 391.7 353 56.7
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.6e-104 383.6 323 60.4
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 2.1e-104 383.3 325 59.4
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 3.9e-103 379.0 268 67.2
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 6.7e-103 378.3 287 66.9
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.1e-102 377.5 225 76.9
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.1e-102 377.5 333 57.4
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.3e-98 364.0 297 61.6
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.7e-98 363.6 348 52.3
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 1.1e-97 360.9 361 53.5
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.1e-97 360.9 308 57.1
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 7.2e-97 358.2 255 67.1
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.1e-94 350.9 315 56.2
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.8e-92 343.6 354 52.8
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 6.9e-92 341.7 176 95.5
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 5.1e-87 325.5 184 81.5
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.1e-86 324.3 314 52.2
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.3e-86 322.8 327 51.1
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 3.7e-85 319.3 191 78.5
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.8e-79 300.4 324 45.4
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.1e-76 291.2 344 48.8
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.8e-71 273.9 195 69.2
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.7e-71 271.9 209 65.6
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.2e-64 251.1 291 48.1
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 2.3e-63 246.9 301 41.5
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 2.4e-60 236.9 232 51.3
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.3e-55 220.3 139 75.5
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 2.3e-55 220.3 156 76.9
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.4e-54 216.1 175 62.9
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.7e-51 206.8 156 62.2
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 4.5e-51 206.1 212 54.7
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.7e-50 204.1 249 42.6
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 1.6e-48 197.6 243 42.0
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 6.0e-43 179.1 273 37.0
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 4.3e-41 172.9 196 49.0
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 5.6e-41 172.6 198 49.0
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 8.3e-37 158.7 116 65.5
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 5.4e-36 156.0 155 51.6
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 4.7e-32 142.9 269 35.3
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 3.0e-26 123.6 66 84.8
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 7.3e-25 119.0 180 40.6
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.6e-24 117.9 120 53.3
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 1.1e-20 105.1 272 29.0
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 9.2e-20 102.1 90 55.6
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 9.2e-20 102.1 90 55.6
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.2e-16 91.7 49 85.7
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 2.8e-16 90.5 49 81.6
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.4e-15 87.4 68 63.2
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.4e-14 83.2 113 44.2
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 1.7e-10 71.2 58 60.3
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.1e-07 62.0 46 54.3


User provided reference genes

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