Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 2390.1 1239 100.0
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 2217.6 1263 92.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 2138.2 1256 90.4
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1979.9 1173 89.9
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 0.0e+00 1594.7 911 92.3
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1584.3 1011 81.9
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1552.0 1277 68.0
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1494.6 1247 67.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1231.1 1400 53.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1170.6 1269 54.1
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1165.6 1395 52.0
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1164.8 1413 51.0
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 0.0e+00 1148.7 1205 55.0
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 0.0e+00 1124.4 1290 52.1
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 0.0e+00 1121.3 1252 53.5
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1113.2 1296 52.5
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1109.7 1414 47.9
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1102.0 1424 47.7
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.6e-305 1052.0 1217 50.9
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 6.2e-305 1051.2 1308 50.3
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 4.0e-304 1048.5 1209 51.0
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 5.8e-303 1044.6 1319 49.2
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.2e-301 1038.9 1206 50.6
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 4.3e-298 1028.5 1395 45.5
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 8.1e-297 1024.2 1362 48.1
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 1.1e-296 1023.8 1374 47.3
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.9e-293 1013.1 1435 45.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 7.9e-292 1007.7 1293 48.3
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 5.6e-290 1001.5 1211 50.0
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.7e-289 998.8 1428 45.5
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 1.9e-282 976.5 1414 46.0
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 4.3e-282 975.3 1420 44.8
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 2.9e-278 962.6 1415 45.2
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 1.2e-276 957.2 1401 45.1
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.6e-273 946.8 1442 42.8
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 8.2e-273 944.5 1409 44.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.4e-267 927.2 1410 44.5
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 2.0e-266 923.3 1372 44.0
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 8.2e-265 917.9 1398 43.3
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 3.4e-263 912.5 1484 42.2
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 7.4e-258 894.8 1357 43.1
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 9.7e-250 867.8 1356 42.6
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.7e-249 867.1 1395 43.0
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.1e-248 864.4 1264 44.7
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.7e-246 857.1 1425 42.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.8e-243 847.0 1369 42.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.3e-241 840.9 1309 43.5
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.0e-238 831.2 1442 40.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 3.0e-235 819.7 1382 40.4
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 2.7e-231 806.6 1328 41.4
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 7.3e-229 798.5 1443 39.8
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.4e-224 784.3 1207 42.7
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 4.1e-224 782.7 1377 40.0
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 3.9e-222 776.2 1395 40.5
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 5.6e-221 772.3 1245 42.5
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 8.0e-220 768.5 1224 41.5
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.4e-219 767.7 1262 40.6
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 5.8e-218 762.3 1324 40.4
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 6.0e-215 752.3 1331 39.7
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 2.3e-211 740.3 1264 39.5
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 5.2e-211 739.2 1279 40.2
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 8.9e-211 738.4 1262 40.5
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 2.6e-210 736.9 1193 42.0
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.2e-209 733.8 832 52.0
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.9e-209 733.4 1199 41.5
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 2.9e-209 733.4 1221 41.5
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 4.6e-207 726.1 1253 39.0
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 2.8e-204 716.8 1290 39.4
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 3.6e-204 716.5 1252 39.8
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 5.2e-203 712.6 1257 39.9
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 8.9e-203 711.8 1192 41.4
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.5e-202 711.1 1253 38.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 7.6e-202 708.8 1313 39.0
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 3.2e-200 703.4 1281 39.3
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.9e-197 694.1 1336 37.6
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 2.0e-194 684.1 1246 39.0
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 3.8e-193 679.9 1326 37.9
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.1e-191 674.1 1288 39.0
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.7e-190 671.0 1262 38.3
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 8.1e-188 662.1 1339 37.8
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.6e-183 647.9 1179 37.1
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.8e-182 644.4 1162 36.9
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 3.0e-182 643.7 1176 37.8
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.1e-181 641.7 1437 34.7
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-171 608.6 877 43.3
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 9.3e-168 595.5 1253 35.3
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.8e-166 591.3 822 44.8
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.7e-140 503.8 843 42.0
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.3e-116 423.3 631 42.2
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 4.4e-109 400.6 1134 31.3
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.1e-104 386.0 1448 28.4
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.3e-100 372.5 684 39.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.2e-84 318.5 630 39.7
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.8e-84 317.8 614 38.4
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.0e-81 308.1 352 49.4
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 9.9e-77 293.1 341 54.8
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 4.2e-75 287.7 325 47.4
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 2.1e-71 275.4 277 52.7
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.5e-61 242.7 296 44.3
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 7.1e-59 233.8 217 65.4
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 8.4e-52 210.3 1683 23.4
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 4.2e-51 208.0 105 96.2
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.2e-43 181.8 494 31.8
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.3e-40 171.8 1555 22.6
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.3e-40 171.8 202 47.0
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.6e-34 152.9 216 42.1
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.3e-31 143.3 150 47.3
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-27 130.2 315 36.5
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.2e-26 126.7 352 33.5
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.1e-22 113.6 228 35.1
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.1e-22 112.1 132 48.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 3.8e-20 105.1 89 56.2
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.5e-19 101.3 1335 22.2
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 1.4e-17 96.7 262 32.8
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 4.0e-17 95.1 112 61.6
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.0e-16 92.8 251 38.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.1e-14 85.5 59 64.4
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 9.1e-14 84.0 122 41.8
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 5.9e-13 81.3 190 35.8
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.3e-12 80.1 328 28.7
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 3.2e-11 75.5 113 38.1
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 4.2e-11 75.1 278 27.0
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 4.2e-11 75.1 181 32.6
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 5.5e-11 74.7 165 25.5
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 7.2e-11 74.3 147 34.0
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.2e-10 73.6 78 44.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.1e-10 72.8 78 43.6
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 4.7e-10 71.6 74 48.6
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 4.0e-09 68.6 87 47.1
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.6e-08 65.9 44 63.6
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 9.8e-08 63.9 135 30.4
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 9.8e-08 63.9 45 66.7
Cc08_g07630 Coffea canephora HOM05D006523 ORTHO05D008212 4.8e-07 61.6 67 52.2
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 6.3e-07 61.2 132 33.3
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 2.4e-06 59.3 58 51.7


User provided reference genes

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