Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.3e-81 305.4 145 100.0
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 3.0e-65 251.9 121 99.2
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.0e-65 251.9 121 99.2
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.0e-65 251.9 121 99.2
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 2.7e-58 228.8 121 91.7
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.7e-49 199.5 121 80.2
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 1.5e-48 196.4 120 79.2
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 6.9e-46 187.6 123 74.8
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 2.0e-45 186.0 132 68.9
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 7.6e-45 184.1 119 74.8
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 2.9e-44 182.2 101 81.2
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 1.1e-43 180.3 118 72.0
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.4e-43 179.9 113 74.3
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 1.4e-43 179.9 101 83.2
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 4.2e-43 178.3 113 74.3
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 4.2e-43 178.3 113 73.5
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 5.4e-43 177.9 123 69.9
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 7.1e-43 177.6 121 71.1
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 9.3e-43 177.2 122 71.3
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 9.3e-43 177.2 122 71.3
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 9.3e-43 177.2 113 75.2
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 9.3e-43 177.2 116 71.6
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 1.6e-42 176.4 121 71.1
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 2.1e-42 176.0 121 72.7
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.7e-42 175.6 102 76.5
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 3.5e-42 175.3 115 73.0
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 4.6e-42 174.9 113 72.6
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 4.6e-42 174.9 85 95.3
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.6e-42 174.9 85 96.5
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 4.6e-42 174.9 109 75.2
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 6.0e-42 174.5 118 70.3
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 6.0e-42 174.5 113 72.6
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 6.0e-42 174.5 118 70.3
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 7.8e-42 174.1 113 72.6
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 7.8e-42 174.1 102 76.5
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 7.8e-42 174.1 102 74.5
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.8e-42 174.1 102 74.5
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 1.0e-41 173.7 105 78.1
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 1.0e-41 173.7 107 73.8
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 1.0e-41 173.7 115 71.3
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 1.3e-41 173.3 101 80.2
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 1.3e-41 173.3 122 71.3
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.7e-41 172.9 100 80.0
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 3.0e-41 172.2 114 71.1
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 3.0e-41 172.2 115 70.4
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 3.0e-41 172.2 101 74.3
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 3.9e-41 171.8 102 76.5
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 5.1e-41 171.4 113 72.6
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 6.6e-41 171.0 102 75.5
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 1.1e-40 170.2 98 76.5
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 3.3e-40 168.7 96 79.2
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 4.3e-40 168.3 102 74.5
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 5.6e-40 167.9 133 63.9
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 5.6e-40 167.9 118 69.5
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 7.3e-40 167.5 107 72.9
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 9.6e-40 167.2 102 74.5
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 1.3e-39 166.8 133 63.2
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 1.6e-39 166.4 112 71.4
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 1.6e-39 166.4 102 70.6
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 1.6e-39 166.4 120 66.7
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.6e-39 166.4 121 66.1
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 2.1e-39 166.0 116 72.4
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 2.8e-39 165.6 100 76.0
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 3.6e-39 165.2 111 70.3
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 4.8e-39 164.9 113 69.9
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 6.2e-39 164.5 96 78.1
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 8.1e-39 164.1 117 65.0
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 1.4e-38 163.3 99 75.8
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 1.4e-38 163.3 119 65.5
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.8e-38 162.9 113 70.8
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 1.8e-38 162.9 105 76.2
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 1.8e-38 162.9 116 67.2
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 2.4e-38 162.5 101 72.3
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 1.2e-37 160.2 128 62.5
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 2.0e-37 159.5 126 60.3
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 2.0e-37 159.5 118 64.4
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 5.8e-37 157.9 97 75.3
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 9.9e-37 157.1 118 63.6
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 1.7e-36 156.4 135 59.3
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 3.8e-36 155.2 97 74.2
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 4.9e-36 154.8 163 52.1
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 6.4e-36 154.5 123 62.6
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 6.4e-36 154.5 135 60.0
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 8.4e-36 154.1 98 70.4
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 1.9e-35 152.9 138 55.1
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 2.4e-35 152.5 122 61.5
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 3.2e-35 152.1 96 68.8
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 5.4e-35 151.4 122 61.5
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 9.3e-35 150.6 98 68.4
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.6e-34 149.8 122 60.7
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 2.1e-34 149.4 101 63.4
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 3.5e-34 148.7 99 66.7
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 4.6e-34 148.3 103 68.0
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 6.7e-33 144.4 147 55.8
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 5.6e-32 141.4 99 65.7
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 5.6e-32 141.4 131 50.4
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 9.6e-32 140.6 154 50.0
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 3.7e-31 138.7 113 60.2
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 6.2e-31 137.9 102 62.7
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 1.1e-30 137.1 122 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 6.4e-28 127.9 101 56.4
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 6.4e-28 127.9 104 55.8
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 1.4e-27 126.7 83 74.7
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 3.2e-27 125.6 101 55.4
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.0e-25 120.6 96 58.3
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 3.9e-25 118.6 101 51.5
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 9.0e-22 107.5 88 60.2
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 1.3e-20 103.6 99 48.5
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.8e-17 93.2 63 61.9
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 1.8e-17 93.2 85 54.1
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 6.7e-17 91.3 75 60.0
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 1.4e-14 83.6 102 41.2
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 1.8e-14 83.2 53 71.7
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 7.9e-10 67.8 39 74.4
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 1.0e-09 67.4 39 74.4
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 2.3e-09 66.2 39 74.4
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 3.0e-09 65.9 39 76.9
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 1.3e-07 60.5 34 76.5
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 1.3e-07 60.5 74 33.8
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 1.7e-07 60.1 36 72.2
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 3.7e-07 58.9 96 39.6
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 4.8e-07 58.5 37 67.6
FAN10G3948 Fragaria x ananassa HOM05D006465 ORTHO05D008207 6.3e-07 58.2 25 96.0
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 1.8e-06 56.6 36 66.7


User provided reference genes

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