Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.7e-291 1004.6 494 100.0
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.7e-286 986.9 494 98.4
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.3e-285 983.4 494 97.8
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.2e-283 979.2 494 97.6
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.5e-283 977.6 494 97.2
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.4e-276 955.7 494 95.1
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 9.2e-260 899.8 495 88.7
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 5.1e-250 867.5 442 96.2
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.5e-249 865.1 495 84.4
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 4.3e-249 864.4 494 84.8
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 2.8e-248 861.7 495 84.4
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 6.2e-248 860.5 493 85.4
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 8.1e-248 860.1 495 84.2
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 3.1e-247 858.2 495 84.2
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 7.6e-246 853.6 494 83.6
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.9e-245 851.7 496 83.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 8.4e-245 850.1 494 84.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 8.4e-245 850.1 496 82.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.4e-244 848.6 496 83.5
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 9.3e-244 846.7 495 82.8
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.6e-243 845.9 496 83.9
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.1e-243 845.5 495 82.8
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.1e-243 845.5 496 83.7
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.7e-243 845.1 495 82.4
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 4.6e-243 844.3 494 83.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 6.0e-243 844.0 494 83.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 6.0e-243 844.0 495 82.6
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.7e-242 842.4 496 83.5
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.7e-242 842.4 493 82.6
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.7e-242 842.4 493 83.6
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 6.6e-242 840.5 488 84.2
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.7e-242 840.1 496 83.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.5e-241 839.3 492 82.1
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.5e-241 839.3 493 82.6
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.5e-241 839.3 496 83.3
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.5e-241 839.3 492 83.5
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.5e-241 839.3 493 83.6
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.9e-241 839.0 493 83.4
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.3e-241 838.2 496 83.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.3e-241 837.0 496 83.1
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.3e-240 836.3 493 82.2
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 2.1e-240 835.5 496 82.7
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.8e-240 835.1 492 81.5
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 6.2e-240 833.9 495 82.0
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 8.1e-240 833.6 495 82.0
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 8.1e-240 833.6 489 83.6
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-239 833.2 496 82.9
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.1e-239 833.2 492 82.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.4e-239 832.8 496 81.9
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.8e-239 832.4 492 83.1
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 4.0e-239 831.2 496 82.3
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.5e-238 829.3 493 81.5
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.5e-238 829.3 492 81.9
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.0e-238 828.9 495 82.0
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 2.0e-238 828.9 497 80.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.5e-238 827.8 493 81.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.5e-238 827.8 506 79.8
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 9.9e-238 826.6 492 82.3
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.7e-237 825.9 510 79.6
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 3.8e-237 824.7 493 81.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 8.4e-237 823.5 492 81.5
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.4e-236 822.0 493 81.1
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 2.4e-236 822.0 492 81.3
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.6e-235 819.3 493 80.5
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.6e-235 819.3 498 80.1
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 6.0e-235 817.4 491 81.1
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 6.0e-235 817.4 493 80.7
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.3e-234 816.2 526 77.9
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 3.0e-234 815.1 499 80.6
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 3.9e-234 814.7 494 81.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.9e-234 814.7 493 80.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 8.7e-234 813.5 488 81.1
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 3.3e-233 811.6 493 80.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 7.4e-233 810.4 491 80.2
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 7.4e-233 810.4 495 79.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 3.7e-232 808.1 489 80.6
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.7e-232 808.1 491 80.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 3.7e-232 808.1 495 79.0
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 4.8e-232 807.7 491 79.6
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 4.8e-232 807.7 494 79.6
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 6.2e-232 807.4 491 80.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.1e-231 806.6 488 80.5
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.1e-231 806.6 498 80.5
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.8e-231 805.8 493 79.7
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 4.0e-231 804.7 479 81.4
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.5e-230 802.7 495 79.8
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.0e-230 802.4 486 79.8
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 5.8e-230 800.8 491 79.4
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 5.8e-230 800.8 497 79.3
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.7e-229 799.3 531 75.3
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 4.9e-229 797.7 488 80.1
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.4e-228 796.2 488 79.5
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-228 795.8 486 80.0
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.9e-228 795.8 488 79.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.4e-228 795.4 477 81.8
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.4e-228 795.4 497 78.5
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 7.1e-228 793.9 496 77.4
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.6e-227 791.2 492 78.7
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 8.7e-226 786.9 492 78.5
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.3e-223 777.7 493 76.3
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.5e-220 767.7 490 75.9
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.2e-219 766.5 512 73.8
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.5e-219 765.0 484 77.3
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.5e-219 765.0 486 75.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.3e-217 758.4 436 84.9
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-215 751.9 384 96.9
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.9e-213 745.3 441 81.4
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.9e-213 745.3 441 81.9
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 8.5e-213 743.8 442 83.3
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 4.3e-209 731.5 443 81.3
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 5.7e-209 731.1 498 74.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.0e-205 720.3 438 79.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 5.0e-205 718.0 490 73.3
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 4.6e-203 711.4 485 73.2
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 2.8e-200 702.2 389 87.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 9.4e-196 687.2 487 69.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 4.2e-188 661.8 387 86.8
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.3e-184 650.2 381 83.5
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 4.8e-184 648.3 404 78.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.3e-181 640.2 498 67.5
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 5.5e-180 634.8 493 66.3
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.1e-179 631.3 491 66.8
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 4.0e-178 628.6 347 88.2
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.3e-176 620.9 471 68.8
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 8.6e-173 610.9 506 62.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.0e-161 573.2 462 67.1
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.0e-158 563.1 391 73.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.5e-145 520.4 267 97.0
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 5.1e-141 505.4 529 49.9
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.5e-121 440.7 228 96.1
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 4.9e-120 435.6 458 50.4
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.1e-118 430.3 311 72.7
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 8.1e-115 418.3 245 82.0
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-110 404.4 301 68.4
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 4.6e-110 402.5 241 80.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.1e-106 391.3 436 51.6
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.6e-105 386.7 238 77.7
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 7.6e-105 385.2 251 74.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 5.3e-98 362.5 303 67.0
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.0e-96 358.2 481 45.5
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.5e-95 352.4 236 72.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.4e-89 333.2 235 70.2
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.7e-75 287.7 254 62.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-64 251.5 158 75.9
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.3e-56 224.9 259 50.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.7e-51 208.0 150 69.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-47 194.5 297 43.1
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-43 181.8 113 77.0
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.9e-43 180.6 103 81.6
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 3.7e-43 180.3 99 85.9
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.4e-42 178.3 151 64.2
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 4.1e-42 176.8 146 61.0
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 3.9e-40 170.2 104 77.9
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 2.7e-33 147.5 147 55.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 2.5e-31 141.0 75 89.3
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.5e-31 141.0 75 88.0
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.2e-30 138.7 160 49.4
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 2.2e-27 127.9 79 75.9
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 3.7e-27 127.1 85 72.9
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 2.2e-19 101.3 51 94.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 6.4e-19 99.8 93 58.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.1e-14 84.7 61 73.8
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 4.9e-11 73.6 36 88.9
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 7.8e-09 66.2 51 64.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 2.1e-06 58.2 38 76.3
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 8.1e-06 56.2 30 76.7


User provided reference genes

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