Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2659.4 1363 100.0
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2560.4 1363 96.9
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2557.7 1363 97.0
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 2466.4 1363 94.3
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2437.1 1363 93.8
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 2150.9 1366 83.7
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1613.2 1390 64.3
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1452.2 1410 58.0
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1407.1 1543 52.9
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1399.8 1410 56.3
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1370.1 1399 55.9
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1369.8 1409 55.1
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1368.6 1399 55.6
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1357.4 1399 55.6
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1352.8 1431 53.8
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1352.0 1405 54.0
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1349.0 1399 55.5
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1344.3 1396 54.9
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1340.9 1401 54.2
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1336.2 1489 52.9
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1304.7 1413 52.7
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1302.7 1392 53.7
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1291.2 1397 53.0
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1283.9 1396 52.6
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1269.2 1401 52.2
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1261.9 1395 51.7
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1259.2 1396 52.1
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1258.4 1392 52.0
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1253.0 1396 52.1
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1246.5 1397 51.6
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1246.1 1387 51.5
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1231.1 1399 50.8
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1228.8 1402 50.4
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1224.2 1389 50.4
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1223.0 1400 51.4
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1222.2 1437 50.0
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1219.5 1387 51.0
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1219.1 1455 50.1
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1216.1 1449 49.2
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1213.7 1397 51.8
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1206.4 1506 49.0
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1192.6 1386 49.9
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1191.8 1413 49.5
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1186.8 1400 50.1
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1183.7 1427 48.6
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1173.3 1422 48.5
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1172.9 1396 49.4
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1167.5 1420 49.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1164.8 1396 49.4
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1163.3 1409 49.0
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 1393 49.4
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1155.6 1386 49.3
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1142.1 1414 49.1
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1137.1 1407 48.3
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1136.3 1433 47.2
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1133.2 1394 48.0
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1131.3 1388 47.8
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1127.5 1452 47.5
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1124.0 1415 47.3
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1111.7 1398 47.0
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1109.0 1408 47.2
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1103.2 1397 46.6
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1100.5 1406 46.9
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1097.4 1396 46.3
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1096.6 1385 47.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1095.1 1424 46.7
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1094.3 1392 46.4
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1093.2 1426 46.8
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1091.6 1396 47.5
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1091.6 1440 46.8
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1091.6 1433 45.7
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1089.7 1392 46.3
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1089.7 1392 46.8
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1087.8 1395 46.3
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1087.0 1413 47.2
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1086.2 1398 46.1
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1085.9 1398 46.1
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1085.5 1391 46.5
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1082.8 1398 46.1
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1082.8 1398 46.1
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1082.8 1398 46.1
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 1.9e-311 1072.8 1440 46.2
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 6.5e-311 1071.2 1400 47.0
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.4e-302 1043.5 1405 45.7
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 9.2e-302 1040.8 1395 45.4
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 9.6e-299 1030.8 1342 46.6
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 1.1e-291 1007.3 1098 52.5
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 3.5e-285 985.7 1412 44.2
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 5.1e-284 981.9 1388 44.5
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 2.1e-282 976.5 1295 45.9
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 6.2e-266 921.8 1380 41.9
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 2.2e-263 913.3 1387 41.5
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 2.3e-260 903.3 1137 47.6
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 2.7e-253 879.8 962 54.1
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.1e-249 867.8 951 55.5
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.9e-246 857.1 1353 41.0
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.8e-217 760.8 856 53.0
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 5.4e-217 759.2 923 48.2
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 4.4e-195 686.4 856 48.0
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.9e-185 654.4 705 52.1
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.5e-179 634.8 729 52.0
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 2.6e-179 634.0 624 55.6
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.9e-178 630.6 733 49.8
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.9e-175 620.2 750 49.9
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.7e-170 604.7 829 43.8
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 4.8e-157 560.1 479 60.1
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 3.2e-153 547.4 1341 31.8
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 3.5e-152 543.9 1359 32.7
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 7.6e-147 526.2 641 47.1
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.9e-135 487.3 524 48.9
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.7e-133 481.9 359 67.4
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 4.5e-131 473.8 1386 28.6
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 1.3e-125 455.7 552 49.3
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 8.2e-125 453.0 1169 31.3
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 6.5e-122 443.4 1369 27.8
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.5e-118 432.2 359 58.8
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.5e-113 415.6 499 47.9
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.3e-109 399.8 417 48.9
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 6.1e-96 357.1 351 58.1
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 4.3e-89 334.3 347 49.3
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 6.0e-83 313.9 701 33.0
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.9e-78 296.6 326 46.3
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 2.4e-68 265.4 273 52.7
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 7.1e-68 263.8 316 49.4
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 3.6e-56 224.9 405 42.0
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.4e-54 218.4 242 53.3
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 8.7e-50 203.8 326 40.2
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.3e-45 189.9 274 44.9
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.5e-41 176.4 290 37.9
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 4.3e-41 174.9 337 38.3
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.4e-39 169.1 116 71.6
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 5.5e-36 157.9 363 30.6
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 5.1e-34 151.4 502 26.7
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.3e-32 146.7 198 43.9
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 2.5e-25 122.5 169 46.2
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 7.7e-22 110.9 213 37.6
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 3.6e-19 102.1 94 54.3
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 9.1e-15 87.4 494 21.3
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 5.0e-13 81.6 86 53.5
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 8.5e-13 80.9 140 37.1
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.7e-11 75.9 87 49.4
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 8.0e-11 74.3 107 41.1
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 4.8e-08 65.1 61 55.7
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 8.2e-08 64.3 412 21.6


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