Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 1.4e-50 202.6 100 100.0
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 6.4e-43 177.2 86 100.0
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 6.4e-43 177.2 86 100.0
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 6.4e-43 177.2 86 100.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 6.4e-43 177.2 86 100.0
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 6.4e-43 177.2 86 100.0
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 4.1e-42 174.5 86 98.8
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 2.3e-40 168.7 86 93.0
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 7.1e-34 147.1 70 98.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-33 146.0 70 98.6
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 1.3e-32 142.9 96 77.1
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 2.3e-32 142.1 86 82.6
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 3.6e-30 134.8 86 77.9
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 3.4e-28 128.3 86 70.9
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 2.9e-27 125.2 86 74.4
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 8.4e-27 123.6 86 72.1
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 8.4e-27 123.6 87 72.4
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 7.1e-26 120.6 86 70.9
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 1.6e-25 119.4 86 66.3
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 1.6e-25 119.4 87 66.7
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 2.7e-25 118.6 76 76.3
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 2.7e-25 118.6 76 73.7
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 6.0e-25 117.5 86 70.9
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 6.0e-25 117.5 77 72.7
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 1.0e-24 116.7 76 76.3
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 3.0e-24 115.2 85 65.9
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 3.0e-24 115.2 86 68.6
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 3.9e-24 114.8 86 66.3
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 3.9e-24 114.8 81 71.6
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 3.9e-24 114.8 84 71.4
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 6.6e-24 114.0 86 65.1
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 8.7e-24 113.6 83 67.5
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 1.1e-23 113.2 76 73.7
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 1.5e-23 112.8 86 65.1
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 1.5e-23 112.8 86 69.8
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 1.9e-23 112.5 86 68.6
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 1.9e-23 112.5 78 70.5
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 2.5e-23 112.1 78 69.2
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.5e-23 112.1 91 64.8
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 3.3e-23 111.7 78 70.5
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 4.3e-23 111.3 86 68.6
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 4.3e-23 111.3 83 67.5
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 4.3e-23 111.3 86 64.0
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 4.3e-23 111.3 78 65.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 5.6e-23 110.9 86 66.3
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 7.3e-23 110.5 86 66.3
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 7.3e-23 110.5 78 64.1
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 9.6e-23 110.2 86 65.1
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 9.6e-23 110.2 78 64.1
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.3e-22 109.8 88 63.6
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 1.6e-22 109.4 86 66.3
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 1.6e-22 109.4 86 67.4
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 2.1e-22 109.0 86 64.0
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 2.8e-22 108.6 82 64.6
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 2.8e-22 108.6 78 67.9
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 4.8e-22 107.8 86 65.1
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.8e-22 107.8 78 64.1
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.8e-22 107.8 78 64.1
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 4.8e-22 107.8 78 66.7
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.8e-22 107.8 78 65.4
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 4.8e-22 107.8 78 65.4
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 4.8e-22 107.8 78 65.4
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 4.8e-22 107.8 86 62.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 6.2e-22 107.5 80 66.2
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 6.2e-22 107.5 83 65.1
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 6.2e-22 107.5 79 65.8
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 6.2e-22 107.5 80 67.5
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 8.1e-22 107.1 59 83.1
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 1.1e-21 106.7 76 68.4
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 1.1e-21 106.7 76 68.4
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.4e-21 106.3 79 64.6
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.4e-21 106.3 86 64.0
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 1.4e-21 106.3 79 65.8
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 1.4e-21 106.3 77 64.9
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.8e-21 105.9 80 66.2
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.8e-21 105.9 77 66.2
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.8e-21 105.9 86 64.0
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 2.4e-21 105.5 82 63.4
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.4e-21 105.5 82 64.6
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 2.4e-21 105.5 79 64.6
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 3.1e-21 105.1 80 63.8
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 3.1e-21 105.1 80 62.5
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 4.0e-21 104.8 80 65.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 5.3e-21 104.4 76 68.4
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 6.9e-21 104.0 81 61.7
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 6.9e-21 104.0 78 66.7
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 6.9e-21 104.0 77 66.2
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 6.9e-21 104.0 78 64.1
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 9.0e-21 103.6 86 60.5
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 1.2e-20 103.2 78 59.0
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 1.2e-20 103.2 64 75.0
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 2.0e-20 102.4 79 63.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 2.0e-20 102.4 59 78.0
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 2.6e-20 102.1 64 75.0
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.6e-20 102.1 78 65.4
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 2.6e-20 102.1 78 65.4
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 2.6e-20 102.1 78 62.8
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 3.4e-20 101.7 83 59.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 3.4e-20 101.7 65 72.3
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 3.4e-20 101.7 65 72.3
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 3.4e-20 101.7 65 72.3
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 3.4e-20 101.7 65 72.3
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 3.4e-20 101.7 56 82.1
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 3.4e-20 101.7 83 61.4
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 9.9e-20 100.1 57 80.7
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 1.3e-19 99.8 56 82.1
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 1.7e-19 99.4 65 69.2
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 1.7e-19 99.4 65 69.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 2.2e-19 99.0 86 57.0
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 2.9e-19 98.6 60 73.3
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 3.8e-19 98.2 75 64.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.4e-19 97.1 77 62.3
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 1.1e-18 96.7 86 59.3
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.1e-18 96.7 74 62.2
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 1.4e-18 96.3 65 66.2
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 3.2e-18 95.1 78 62.8
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 2.7e-17 92.0 76 60.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 2.7e-17 92.0 55 74.5
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.0e-16 90.1 87 60.9
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 4.3e-15 84.7 55 67.3
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.2e-12 76.6 52 73.1
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 3.4e-12 75.1 74 54.1
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 7.6e-12 73.9 54 68.5
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 1.7e-11 72.8 37 89.2
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 4.2e-10 68.2 37 86.5
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.2e-10 68.2 37 83.8
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 4.2e-10 68.2 37 83.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.6e-09 66.2 54 61.1
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 4.6e-09 64.7 41 73.2
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 7.9e-09 63.9 37 78.4
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.3e-08 63.2 59 54.2
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.8e-06 55.5 56 50.0


User provided reference genes

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