Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0946 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.5e-149 532.7 258 100.0
Prupe.7G211000 Prunus persica HOM05D003753 ORTHO05D005081 1.2e-82 310.5 414 46.4
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 3.5e-77 292.4 442 43.2
Oeu018239.1 Olea europaea HOM05D003753 ORTHO05D005081 7.3e-75 284.6 447 41.6
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 1.8e-73 280.0 453 40.2
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 2.4e-73 279.6 448 40.0
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 2.4e-73 279.6 443 40.4
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 5.3e-73 278.5 447 40.3
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 1.2e-72 277.3 447 41.2
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 1.2e-72 277.3 442 40.0
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 5.8e-72 275.0 444 39.6
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 2.9e-71 272.7 431 40.4
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.4e-70 270.4 450 39.1
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 2.4e-70 269.6 453 39.7
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 4.2e-70 268.9 445 40.2
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 7.1e-70 268.1 447 39.6
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 7.1e-70 268.1 448 41.3
MBI06_g13419_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 9.3e-70 267.7 414 41.3
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 9.3e-70 267.7 443 38.8
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.1e-69 266.5 444 41.7
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 2.1e-69 266.5 456 38.4
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 2.7e-69 266.2 441 39.9
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 2.7e-69 266.2 451 40.1
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.7e-69 266.2 439 41.0
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.7e-69 266.2 439 41.0
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.7e-69 266.2 439 41.0
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.5e-69 265.8 448 41.1
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 4.6e-69 265.4 450 39.8
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 7.9e-69 264.6 440 39.8
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 7.9e-69 264.6 441 38.3
AUR62033985 Chenopodium quinoa HOM05D003753 ORTHO05D005081 1.0e-68 264.2 396 39.6
HanXRQChr06g0178531 Helianthus annuus HOM05D003753 ORTHO05D005081 3.9e-68 262.3 430 40.2
EL10Ac8g19226 Beta vulgaris HOM05D003753 ORTHO05D005081 5.1e-68 261.9 409 40.3
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 6.6e-68 261.5 439 37.8
HanXRQChr11g0321581 Helianthus annuus HOM05D003753 ORTHO05D005081 4.3e-67 258.8 430 39.8
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 1.3e-66 257.3 439 39.4
AUR62027495 Chenopodium quinoa HOM05D003753 ORTHO05D005081 4.8e-66 255.4 390 40.3
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 9.0e-65 251.1 438 38.8
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 1.5e-64 250.4 448 38.4
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 2.0e-64 250.0 448 38.2
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 2.6e-64 249.6 443 37.2
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 9.9e-64 247.7 444 38.1
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 1.3e-63 247.3 435 37.9
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 1.3e-63 247.3 438 39.7
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 2.2e-63 246.5 441 36.7
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 4.9e-63 245.4 449 37.6
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 6.4e-63 245.0 450 38.2
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 3.2e-62 242.7 453 37.3
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 4.2e-62 242.3 444 36.3
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 1.2e-61 240.7 448 37.3
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 1.2e-61 240.7 442 37.3
PSO541G3309 Papaver somniferum HOM05D003753 ORTHO05D005081 1.6e-61 240.4 448 35.5
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 1.6e-61 240.4 478 34.5
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 2.1e-61 240.0 433 40.2
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 6.7e-60 235.0 464 36.0
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 1.9e-59 233.4 448 36.6
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 1.9e-59 233.4 446 37.9
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.3e-58 230.7 441 36.1
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 3.7e-58 229.2 453 36.0
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 8.1e-58 228.0 428 34.8
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 1.1e-57 227.6 452 36.5
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 1.8e-57 226.9 445 36.9
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 2.4e-57 226.5 446 36.5
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 3.1e-57 226.1 446 36.8
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 4.0e-57 225.7 445 36.0
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 4.0e-57 225.7 447 35.8
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 6.9e-57 224.9 446 36.3
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 9.0e-57 224.6 449 35.2
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 1.2e-56 224.2 454 35.2
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 4.5e-56 222.2 452 35.4
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 4.5e-56 222.2 449 34.7
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 3.8e-55 219.2 448 35.3
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 4.9e-55 218.8 445 36.2
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 4.9e-55 218.8 401 37.2
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 6.5e-55 218.4 453 34.9
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 6.5e-55 218.4 445 34.8
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 8.4e-55 218.0 447 34.9
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 1.4e-54 217.2 463 34.1
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 1.4e-54 217.2 440 33.6
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 1.4e-54 217.2 443 35.4
Solyc07g039200.4 Solanum lycopersicum HOM05D003753 ORTHO05D005081 1.9e-54 216.9 436 34.4
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 2.5e-54 216.5 448 34.4
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 2.5e-54 216.5 443 35.4
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 3.2e-54 216.1 447 34.2
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 3.2e-54 216.1 447 34.7
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 4.2e-54 215.7 448 35.0
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 4.2e-54 215.7 439 34.4
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 5.5e-54 215.3 429 35.7
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 7.1e-54 214.9 499 32.9
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 1.2e-53 214.2 446 35.2
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 1.6e-53 213.8 447 34.5
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 1.6e-53 213.8 448 34.4
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 1.6e-53 213.8 454 33.9
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 2.1e-53 213.4 436 34.6
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 2.7e-53 213.0 442 35.1
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 3.5e-53 212.6 429 34.5
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 3.5e-53 212.6 442 34.4
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 4.6e-53 212.2 445 34.2
Aqoxy7G01225 Aquilegia oxysepala HOM05D003753 ORTHO05D005081 8.7e-52 208.0 430 34.0
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 1.1e-51 207.6 447 34.9
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 2.5e-51 206.5 448 33.9
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 2.5e-51 206.5 448 33.9
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 4.3e-51 205.7 448 33.9
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 4.3e-51 205.7 432 33.1
Solyc05g018780.1 Solanum lycopersicum HOM05D003753 ORTHO05D005081 7.4e-51 204.9 351 37.6
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 9.6e-51 204.5 454 33.5
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 2.1e-50 203.4 437 34.3
BraA07t27911Z Brassica rapa HOM05D003753 ORTHO05D005081 3.7e-50 202.6 367 37.3
FAN02G0879 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.7e-50 202.6 99 97.0
Atru.chr7.1580 Acer truncatum HOM05D003753 ORTHO05D005081 6.3e-50 201.8 104 91.3
Lj7A675G38 Lonicera japonica HOM05D003753 ORTHO05D005081 8.2e-50 201.4 104 91.3
PSO210G0422 Papaver somniferum HOM05D003753 ORTHO05D005081 8.2e-50 201.4 453 33.6
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 1.1e-49 201.1 483 31.7
C07p02380 Brassica napus HOM05D003753 ORTHO05D005081 1.4e-49 200.7 373 38.3
PSO210G4643 Papaver somniferum HOM05D003753 ORTHO05D005081 3.1e-49 199.5 442 33.9
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 4.1e-49 199.1 447 33.1
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 2.0e-48 196.8 461 31.9
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 3.4e-48 196.1 446 33.4
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 3.4e-48 196.1 446 33.4
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 1.3e-47 194.1 439 31.9
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 2.2e-47 193.4 500 30.2
BcaC06g36597 Brassica carinata HOM05D003753 ORTHO05D005081 2.9e-47 193.0 104 86.5
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 2.9e-47 193.0 446 31.8
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 2.9e-47 193.0 446 31.8
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.9e-47 193.0 444 33.3
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 5.0e-47 192.2 436 32.6
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 5.0e-47 192.2 436 32.6
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 5.0e-47 192.2 436 32.6
Pp3c12_16950 Physcomitrium patens HOM05D003753 ORTHO05D005081 5.0e-47 192.2 449 30.1
BolC7t40644H Brassica oleracea HOM05D003753 ORTHO05D005081 2.5e-46 189.9 104 86.5
Hma1.2p1_0798F.1_g219790 Hydrangea macrophylla HOM05D003753 ORTHO05D005081 2.5e-46 189.9 263 43.7
Sopen05g009090 Solanum pennellii HOM05D003753 ORTHO05D005081 1.6e-45 187.2 112 79.5
Sopen05g009100 Solanum pennellii HOM05D003753 ORTHO05D005081 1.6e-45 187.2 112 79.5
Sopen05g016940 Solanum pennellii HOM05D003753 ORTHO05D005081 1.6e-45 187.2 112 79.5
Os12g0132400 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 1.3e-44 184.1 104 80.8
Solyc05g014090.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.3e-44 183.3 112 78.6
SEGI_14219 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 1.1e-43 181.0 442 31.0
PGSC0003DMG400025556 Solanum tuberosum HOM05D003753 ORTHO05D005081 1.5e-43 180.6 110 80.0
SEGI_09916 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 3.3e-43 179.5 411 31.4
ATR0807G172 Amborella trichopoda HOM05D003753 ORTHO05D005081 2.2e-42 176.8 436 30.5
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 1.1e-41 174.5 439 30.1
SHI20703 Sapria himalayana HOM05D003753 ORTHO05D005081 6.9e-41 171.8 104 76.0
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 1.7e-39 167.2 447 31.8
Psat7g005120 Pisum sativum HOM05D003753 ORTHO05D005081 5.5e-38 162.2 85 82.4
Atru.chr7.1581 Acer truncatum HOM05D003753 ORTHO05D005081 2.1e-37 160.2 85 82.4
MBI06_g38946_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 2.7e-37 159.8 113 70.8
TAR626G1816 Trochodendron aralioides HOM05D003753 ORTHO05D005081 4.6e-37 159.1 85 82.4
SMO270G0139 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 3.9e-36 156.0 438 28.8
Mapoly0090s0067 Marchantia polymorpha HOM05D003753 ORTHO05D005081 6.3e-34 148.7 455 27.5
Cre17.g724850 Chlamydomonas reinhardtii HOM05D003753 ORTHO05D005081 1.3e-31 141.0 460 26.3
SEGI_28493 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 3.6e-29 132.9 97 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2490 Anthoceros agrestis HOM05D003753 ORTHO05D005081 1.0e-28 131.3 97 61.9
A07p01230 Brassica napus HOM05D003753 ORTHO05D005081 1.5e-27 127.5 356 31.2
SalBow6G3809 Salvia bowleyana HOM05D003753 ORTHO05D005081 9.7e-27 124.8 113 56.6
MBI06_g38945_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D020828 1.7e-26 124.0 72 76.4
SalBow6G3352 Salvia bowleyana HOM05D003753 ORTHO05D020828 9.1e-25 118.2 71 73.2
TAR626G1791 Trochodendron aralioides HOM05D003753 ORTHO05D014439 1.2e-24 117.9 64 81.2
Sopen00g013120 Solanum pennellii HOM05D003753 ORTHO05D020828 3.5e-24 116.3 75 65.3
Sopen05g020340 Solanum pennellii HOM05D003753 ORTHO05D020828 7.7e-24 115.2 82 63.4
Sopen05g009070 Solanum pennellii HOM05D003753 ORTHO05D020828 1.0e-23 114.8 82 62.2
Solyc05g014070.1 Solanum lycopersicum HOM05D003753 ORTHO05D020828 3.8e-23 112.8 78 64.1
CBR_g58801 Chara braunii HOM05D003753 ORTHO05D005081 1.1e-19 101.3 471 24.4
MCO09G725 Micromonas commoda HOM05D003753 ORTHO05D005081 4.8e-18 95.9 79 45.6
BcaC05g28541 Brassica carinata HOM05D003753 ORTHO05D005081 1.1e-17 94.7 119 47.9
BcaB01g02572 Brassica carinata HOM05D003753 ORTHO05D020007 9.1e-17 91.7 86 60.5
PRCOL_00005408 Prasinoderma coloniale HOM05D003753 ORTHO05D005081 1.2e-16 91.3 93 43.0
Cfa024003 Carpinus fangiana HOM05D003753 ORTHO05D123424 2.0e-16 90.5 98 43.9
BcaC06g34676 Brassica carinata HOM05D003753 ORTHO05D020007 7.7e-16 88.6 76 61.8
Lj7A675T45 Lonicera japonica HOM05D003753 ORTHO05D020828 2.2e-15 87.0 54 75.9
BcaB03g16742 Brassica carinata HOM05D003753 ORTHO05D005081 1.5e-14 84.3 101 48.5
BcaC07g38120 Brassica carinata HOM05D003753 ORTHO05D014439 7.2e-14 82.0 72 59.7
Zm00001eb349180 Zea mays HOM05D000087 ORTHO05D001941 9.4e-14 81.6 47 72.3
A07p13640 Brassica napus HOM05D003753 ORTHO05D020007 2.3e-12 77.0 70 57.1
SGA_v2.0_scaffold85G26676 Striga asiatica HOM05D000860 ORTHO05D003230 5.7e-11 72.4 377 25.2
BolC8t48542H Brassica oleracea HOM05D003753 ORTHO05D014439 1.6e-08 64.3 54 57.4
Sopen11g001630 Solanum pennellii HOM05D003753 ORTHO05D020903 1.7e-07 60.8 40 77.5
arahy.Tifrunner.gnm1.ann1.WXAY6T Arachis hypogaea HOM05D003753 ORTHO05D005081 1.9e-06 57.4 47 59.6


User provided reference genes

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