Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.1e-208 727.2 371 100.0
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.3e-205 719.5 370 98.9
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.4e-204 715.3 370 98.4
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 5.6e-201 704.1 370 97.0
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.6e-201 704.1 370 97.0
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.2e-200 703.0 370 96.8
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 5.8e-190 667.5 370 92.2
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.9e-96 355.5 355 55.2
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 6.4e-96 355.1 355 54.6
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 1.8e-95 353.6 366 52.5
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 7.8e-94 348.2 379 53.6
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 3.9e-93 345.9 355 53.5
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 2.8e-91 339.7 355 54.1
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.4e-90 337.4 375 53.6
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.3e-90 336.7 370 51.9
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 6.8e-90 335.1 370 51.6
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 1.2e-89 334.3 376 49.5
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.6e-89 333.2 376 50.0
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 2.2e-88 330.1 369 50.4
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 2.9e-88 329.7 381 49.3
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 4.9e-88 328.9 368 51.9
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.4e-87 327.4 368 52.4
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.4e-87 326.6 367 51.5
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 2.4e-87 326.6 371 51.5
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 4.1e-87 325.9 368 51.6
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 4.6e-86 322.4 367 49.9
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 4.6e-86 322.4 355 51.3
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 7.8e-86 321.6 368 50.0
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.0e-85 319.7 390 50.3
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 2.5e-84 316.6 368 50.5
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 7.3e-84 315.1 348 51.7
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 9.5e-84 314.7 390 49.5
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 9.5e-84 314.7 350 50.6
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 1.6e-83 313.9 367 49.0
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 2.8e-83 313.2 369 50.9
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 6.2e-83 312.0 373 49.3
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.1e-83 311.6 351 49.9
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 8.1e-83 311.6 370 48.6
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 1.1e-82 311.2 368 49.2
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.4e-82 310.8 364 49.7
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.8e-82 310.5 365 49.6
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 1.8e-82 310.5 362 50.0
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 2.3e-82 310.1 371 48.2
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 2.3e-82 310.1 373 48.8
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 5.2e-82 308.9 370 49.2
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.0e-81 307.0 367 49.6
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 2.6e-81 306.6 348 49.1
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 9.8e-81 304.7 368 48.1
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.7e-80 303.9 353 48.2
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 2.2e-80 303.5 358 48.0
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 2.9e-80 303.1 356 48.3
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 2.9e-80 303.1 367 48.2
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 6.4e-80 302.0 352 49.1
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 2.4e-79 300.1 357 47.9
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 3.2e-79 299.7 369 47.2
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 5.4e-79 298.9 367 47.1
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 6.0e-78 295.4 364 47.8
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.7e-77 293.9 346 48.0
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.3e-77 293.5 346 48.0
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 5.1e-77 292.4 398 43.5
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 6.6e-77 292.0 346 48.0
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 6.6e-77 292.0 383 47.0
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 3.3e-76 289.7 359 47.6
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 4.3e-76 289.3 370 48.6
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 5.6e-76 288.9 378 46.6
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 5.6e-76 288.9 406 44.1
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.3e-74 283.5 346 47.4
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 6.8e-74 282.0 360 46.1
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 8.9e-74 281.6 360 45.8
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.5e-73 280.8 458 38.2
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.5e-73 280.8 322 50.3
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.0e-73 280.4 366 46.7
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 2.6e-73 280.0 370 45.7
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 3.4e-73 279.6 355 47.0
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 7.6e-73 278.5 362 45.0
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 2.2e-72 276.9 447 39.4
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.8e-72 276.2 271 56.5
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 1.1e-71 274.6 343 47.5
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.4e-71 274.2 384 43.5
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 2.4e-71 273.5 384 43.2
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 3.2e-71 273.1 360 44.7
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.2e-70 271.2 359 46.0
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.6e-70 270.8 468 37.2
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.6e-70 270.8 366 46.2
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 6.0e-70 268.9 366 45.6
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 7.8e-70 268.5 347 45.2
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 7.8e-70 268.5 346 46.8
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.3e-69 267.7 362 45.3
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-69 267.7 474 36.7
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.5e-68 264.2 350 45.4
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.5e-68 264.2 346 45.1
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 3.3e-68 263.1 366 43.2
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 4.3e-68 262.7 360 42.8
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 4.3e-68 262.7 346 44.8
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.6e-68 261.5 358 44.7
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 1.2e-67 261.2 323 46.1
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 2.8e-67 260.0 353 43.9
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.6e-67 259.6 328 47.6
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.4e-66 257.7 347 43.5
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.5e-65 254.2 355 44.5
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.0e-65 253.8 351 44.2
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.0e-65 253.8 351 44.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.4e-65 252.7 321 48.6
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 8.4e-64 248.4 348 42.2
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.9e-63 247.3 371 44.2
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.2e-63 246.5 376 40.7
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 9.3e-63 245.0 348 42.5
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.2e-62 244.6 337 42.1
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.2e-62 244.6 337 42.1
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 4.6e-62 242.7 348 42.5
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 4.6e-62 242.7 348 42.5
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 3.0e-61 240.0 347 42.4
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 5.1e-61 239.2 347 42.4
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.1e-59 233.8 318 46.9
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.8e-59 232.6 346 43.4
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 8.1e-59 231.9 349 41.5
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 8.1e-59 231.9 353 40.5
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.8e-58 230.7 356 41.9
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.0e-58 229.6 361 41.3
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 1.2e-57 228.0 204 60.8
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.5e-57 227.6 356 40.4
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 3.8e-56 223.0 358 40.2
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 4.9e-56 222.6 353 39.7
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.1e-55 221.5 355 39.7
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.4e-55 221.1 358 39.9
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 2.4e-55 220.3 256 51.6
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 1.6e-54 217.6 353 39.7
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.0e-53 213.4 356 39.3
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 8.7e-53 211.8 369 38.8
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 3.3e-52 209.9 339 40.4
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.6e-51 207.6 365 37.5
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 4.8e-51 206.1 345 38.8
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-50 204.9 321 40.8
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.1e-50 204.9 357 37.5
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 1.5e-49 201.1 398 35.2
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 5.8e-49 199.1 360 37.5
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.8e-48 196.4 348 39.7
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.1e-47 194.9 365 34.5
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.6e-46 189.5 306 39.9
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 6.0e-46 189.1 262 45.0
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.0e-45 186.8 379 34.6
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 3.0e-45 186.8 278 38.8
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 5.1e-45 186.0 370 35.1
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.3e-43 181.4 370 33.0
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.8e-43 180.3 379 33.0
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.8e-43 180.3 379 33.0
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.8e-43 179.5 378 32.5
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 8.1e-43 178.7 365 32.6
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.8e-42 177.6 194 51.0
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 3.1e-42 176.8 186 48.9
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 1.0e-40 171.8 355 35.2
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.9e-40 170.2 176 51.1
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 8.4e-40 168.7 169 56.2
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 3.0e-37 160.2 355 31.5
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 7.4e-36 155.6 320 34.4
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 1.3e-35 154.8 362 34.3
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.8e-32 143.3 165 49.7
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 5.1e-29 132.9 305 32.8
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 1.2e-25 121.7 100 60.0
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 5.0e-24 116.3 177 41.2
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.1e-23 115.2 302 29.5
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 2.3e-21 107.5 195 37.4
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.1e-21 106.3 117 53.8
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 5.7e-20 102.8 77 58.4
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 2.8e-19 100.5 183 37.7
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 1.4e-18 98.2 78 57.7
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.9e-15 87.8 248 32.3
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 2.5e-15 87.4 399 23.1
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.4e-10 70.9 182 33.5
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 1.7e-08 64.7 346 23.4
GSVIVG01026438001 Vitis vinifera HOM05D003539 ORTHO05D004111 9.4e-07 58.9 51 58.8
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 8.0e-06 55.8 75 42.7


User provided reference genes

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