Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 0.0e+00 1690.6 925 100.0
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 0.0e+00 1602.0 926 95.6
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 0.0e+00 1592.4 926 94.7
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 0.0e+00 1581.6 926 94.4
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 0.0e+00 1511.9 926 90.0
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 0.0e+00 1228.8 940 74.7
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 0.0e+00 1159.1 950 72.4
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 0.0e+00 1112.1 940 69.4
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 6.0e-196 688.7 944 51.8
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 5.0e-142 509.6 1065 40.0
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 1.4e-96 358.6 1032 38.0
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 1.3e-94 352.1 1021 37.8
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 5.1e-94 350.1 1006 38.1
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 1.1e-83 315.8 987 36.1
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 8.4e-81 306.2 998 36.9
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 3.4e-74 284.3 984 35.8
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 1.7e-57 228.8 951 33.5
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 3.5e-50 204.5 686 38.0
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 1.0e-49 203.0 993 30.3
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 6.1e-47 193.7 963 32.5
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 8.8e-46 189.9 935 32.3
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 3.3e-45 188.0 1018 32.9
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 7.5e-45 186.8 984 30.5
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 8.2e-44 183.3 646 35.1
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 1.4e-43 182.6 732 35.4
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 7.0e-43 180.3 975 31.4
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 4.5e-42 177.6 983 30.0
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 5.9e-42 177.2 889 32.2
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 8.5e-41 173.3 957 29.5
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 5.5e-40 170.6 919 30.4
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 3.6e-39 167.9 611 35.5
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 4.0e-38 164.5 979 30.0
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 9.8e-37 159.8 971 29.5
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.3e-36 159.5 975 29.4
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 8.3e-36 156.8 973 29.3
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 2.4e-35 155.2 947 28.2
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 2.4e-35 155.2 1009 29.6
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 3.8e-33 147.9 667 32.1
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 3.8e-33 147.9 769 31.6
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 6.6e-33 147.1 993 27.6
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 9.5e-32 143.3 803 26.8
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 2.8e-31 141.7 929 26.7
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 1.4e-30 139.4 680 31.6
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 5.2e-30 137.5 963 29.0
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 3.7e-28 131.3 967 28.4
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 6.3e-28 130.6 982 27.8
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 1.8e-27 129.0 658 31.9
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 3.1e-27 128.3 389 39.6
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 2.0e-26 125.6 630 32.1
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 5.9e-26 124.0 443 36.6
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 5.9e-26 124.0 752 30.6
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 1.3e-25 122.9 967 27.4
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.3e-25 122.9 320 33.8
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 2.3e-25 122.1 692 31.6
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 2.9e-25 121.7 447 34.0
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 1.5e-24 119.4 922 29.6
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 2.5e-24 118.6 892 26.9
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 3.3e-24 118.2 601 30.3
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 3.3e-24 118.2 620 29.4
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 3.3e-24 118.2 319 32.9
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 4.3e-24 117.9 640 31.7
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 7.3e-24 117.1 367 37.9
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 2.1e-23 115.5 389 37.0
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 4.7e-23 114.4 965 27.2
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 1.0e-22 113.2 637 31.2
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 2.3e-22 112.1 381 37.8
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 7.5e-21 107.1 676 29.1
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 9.8e-21 106.7 810 28.8
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 1.3e-20 106.3 457 29.1
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.3e-20 106.3 778 28.8
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 1.7e-20 105.9 318 30.8
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 3.7e-20 104.8 831 26.8
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 4.9e-20 104.4 277 34.3
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 6.4e-20 104.0 425 31.5
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 8.3e-20 103.6 646 29.6
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 1.1e-19 103.2 252 42.5
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 4.1e-19 101.3 468 32.9
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 9.2e-19 100.1 341 41.6
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 1.2e-18 99.8 507 29.2
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 2.0e-18 99.0 340 31.2
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 2.0e-18 99.0 521 29.0
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 5.0e-17 94.4 273 33.3
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 5.0e-17 94.4 273 33.3
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 5.0e-17 94.4 273 33.3
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 1.1e-16 93.2 694 28.7
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 1.1e-16 93.2 125 66.4
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 1.9e-16 92.4 193 46.1
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 2.5e-16 92.0 788 26.6
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 4.3e-16 91.3 76 60.5
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 5.6e-16 90.9 426 27.9
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 7.3e-16 90.5 193 48.7
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 1.2e-15 89.7 394 34.5
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 1.6e-15 89.4 453 33.6
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 2.8e-15 88.6 135 56.3
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 3.6e-15 88.2 281 34.2
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 3.6e-15 88.2 281 34.2
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 6.2e-15 87.4 257 34.6
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 1.1e-14 86.7 766 29.0
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 2.3e-14 85.5 371 35.3
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 5.2e-14 84.3 80 50.0
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 6.8e-14 84.0 377 31.8
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 6.8e-14 84.0 372 34.4
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 4.4e-13 81.3 370 30.8
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 7.0e-11 73.9 82 46.3
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 2.1e-10 72.4 552 26.8
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 3.5e-10 71.6 56 53.6
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.6e-10 71.2 79 63.3
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 6.0e-10 70.9 231 35.9
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 1.7e-09 69.3 48 62.5
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 1.7e-09 69.3 50 62.0
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 1.7e-09 69.3 50 62.0
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 3.0e-09 68.6 80 60.0
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 3.3e-08 65.1 41 63.4
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 4.3e-08 64.7 376 27.1
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.2e-07 63.2 102 46.1
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 1.6e-07 62.8 161 32.9
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.1e-07 62.4 132 32.6
Dinv42333 Davidia involucrata HOM05D006920 ORTHO05D005895 6.2e-07 60.8 58 55.2
Medtr3g053340 Medicago truncatula HOM05D006920 ORTHO05D005895 8.1e-07 60.5 382 27.7
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 1.8e-06 59.3 80 60.0
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 2.3e-06 58.9 315 30.5
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 3.1e-06 58.5 80 53.8


User provided reference genes

Program Settings