Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 0.0e+00 1160.2 605 100.0
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 0.0e+00 1089.3 602 93.4
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.7e-311 1072.0 603 93.7
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.1e-310 1067.4 603 93.5
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.8e-304 1046.2 602 93.7
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.3e-268 929.5 603 81.8
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.2e-178 629.8 682 54.1
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.1e-169 600.9 543 61.9
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.1e-142 511.1 614 49.7
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.1e-140 504.6 644 48.6
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.7e-138 497.3 607 48.4
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 2.2e-138 496.9 618 49.4
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 4.9e-138 495.7 623 48.8
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 3.2e-137 493.0 624 47.1
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 4.2e-137 492.7 651 45.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 4.6e-136 489.2 617 48.3
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.9e-134 483.8 614 48.2
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.9e-129 467.2 576 46.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.2e-128 464.5 591 46.7
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.3e-127 461.1 612 45.9
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 9.6e-126 454.9 629 46.6
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 4.8e-125 452.6 590 48.1
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.8e-124 450.7 526 47.3
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.4e-124 450.3 631 46.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.4e-124 450.3 626 43.1
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.2e-123 448.0 629 45.3
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.0e-123 447.2 575 46.3
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 2.9e-122 443.4 562 46.4
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.9e-121 440.7 587 46.8
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 1.9e-121 440.7 609 45.0
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 4.2e-121 439.5 710 40.4
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 9.3e-121 438.3 565 47.3
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 9.3e-121 438.3 565 47.3
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 6.0e-120 435.6 587 45.0
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 7.9e-120 435.3 638 41.4
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.3e-119 434.5 594 44.6
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 2.3e-119 433.7 591 46.2
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.9e-118 430.6 590 46.3
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.5e-118 430.3 632 43.5
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.3e-118 429.9 532 48.9
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.8e-117 426.8 613 44.2
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 2.8e-117 426.8 635 44.6
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 6.2e-117 425.6 541 46.2
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 8.2e-117 425.2 644 44.4
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.1e-116 424.9 577 46.6
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.1e-116 424.9 602 44.7
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 3.1e-116 423.3 711 39.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 5.3e-116 422.5 592 45.6
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 6.9e-116 422.2 577 45.6
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.5e-115 421.0 660 41.8
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 4.5e-115 419.5 604 43.2
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 4.5e-115 419.5 577 45.6
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 4.5e-115 419.5 581 44.9
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.9e-114 416.8 601 44.1
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 5.5e-113 412.5 588 43.5
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 5.1e-111 406.0 568 43.5
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.7e-111 405.6 568 44.2
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.5e-110 404.4 634 41.6
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.7e-110 402.5 571 43.4
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 8.2e-109 398.7 716 39.1
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.4e-108 397.1 609 41.5
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 4.1e-108 396.4 691 38.8
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.1e-108 396.4 562 43.4
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 9.0e-108 395.2 638 42.2
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 1.3e-106 391.3 573 44.2
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.7e-106 391.0 587 43.4
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.9e-106 390.2 614 42.8
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 3.8e-106 389.8 636 41.7
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 5.0e-106 389.4 655 41.2
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.1e-105 388.3 537 44.9
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 7.2e-105 385.6 624 40.9
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.6e-104 384.4 648 41.8
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 7.9e-104 382.1 648 41.0
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.3e-103 381.3 575 41.9
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.8e-103 380.9 576 41.8
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 6.7e-103 379.0 660 38.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.3e-101 374.8 527 42.5
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.7e-101 374.4 586 41.5
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.2e-101 374.0 667 40.0
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 3.7e-101 373.2 662 38.7
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 6.3e-101 372.5 717 38.9
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 8.2e-101 372.1 628 40.3
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 6.9e-100 369.0 619 39.3
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.0e-99 367.5 596 39.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.2e-98 364.0 629 39.3
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 4.2e-97 359.8 614 39.1
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.6e-96 357.8 577 40.9
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.8e-95 354.4 658 38.8
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 8.8e-95 352.1 723 35.0
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 5.7e-94 349.4 680 37.6
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.4e-92 344.7 864 32.6
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 5.9e-91 339.3 715 36.1
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 8.8e-87 325.5 576 39.4
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.2e-85 320.9 538 38.3
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 3.1e-84 317.0 286 60.5
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 1.7e-82 311.2 709 33.3
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.2e-82 310.8 431 43.9
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.9e-82 310.5 427 45.4
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.2e-80 305.1 438 43.4
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 6.1e-80 302.8 424 43.9
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 4.8e-77 293.1 250 62.0
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.2e-75 288.5 239 63.2
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.0e-74 283.1 190 72.6
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.9e-63 245.7 522 33.3
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 5.7e-62 243.0 203 61.6
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.3e-61 239.6 522 32.6
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.1e-60 238.8 553 31.5
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 2.4e-60 237.7 603 30.5
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 9.2e-60 235.7 669 31.2
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 3.6e-56 223.8 199 61.8
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.8e-55 221.5 521 31.7
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.2e-45 188.0 191 56.0
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 7.8e-43 179.5 208 48.6
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.1e-39 167.5 195 47.7
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 4.4e-38 163.7 276 37.3
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.1e-36 159.1 195 43.1
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.1e-27 128.3 233 36.1
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 7.8e-27 126.3 112 54.5
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 5.6e-25 120.2 198 37.9
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-23 115.2 203 35.0
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 2.4e-23 114.8 169 43.8
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 4.9e-21 107.1 208 34.6
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 1.1e-20 105.9 194 37.6
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 1.1e-20 105.9 194 37.6
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 5.4e-20 103.6 350 29.4
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 3.3e-17 94.4 140 37.9
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 4.8e-16 90.5 144 38.9
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.2e-14 85.9 80 55.0
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 2.6e-14 84.7 131 39.7
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.9e-13 80.5 66 57.6
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.1e-12 79.3 49 77.6
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.2e-11 75.9 57 64.9
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.7e-11 74.7 134 37.3
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 6.0e-11 73.6 43 79.1
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 6.0e-11 73.6 195 30.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.3e-10 71.6 103 41.7
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.7e-10 70.1 61 54.1
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 7.4e-09 66.6 110 40.0
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 7.4e-09 66.6 163 28.8
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 7.4e-09 66.6 163 28.8
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 9.6e-09 66.2 159 29.6
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.3e-08 65.9 75 37.3
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 3.7e-08 64.3 243 26.3
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 8.1e-08 63.2 107 41.1
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.4e-07 62.4 188 27.7
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.4e-07 62.4 132 34.8
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.8e-07 62.0 116 34.5
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.8e-07 62.0 261 28.0
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 3.1e-07 61.2 121 32.2
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 4.0e-07 60.8 74 44.6
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 5.3e-07 60.5 229 23.6
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 5.3e-07 60.5 121 32.2
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 2.6e-06 58.2 56 55.4
FAN18G0605 Fragaria x ananassa HOM05D020850 ORTHO05D025359 4.5e-06 57.4 43 65.1
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 9.9e-06 56.2 64 45.3


User provided reference genes

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